Discovery and assembly of repeat family pseudomolecules from sparse genomic sequence data using the Assisted Automated Assembler of Repeat Families (AAARF) algorithm

doi:10.1186/1471-2105-9-235

BMC Bioinformatics

Volume 9

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Discovery and assembly of repeat family pseudomolecules from sparse genomic sequence data using the Assisted Automated Assembler of Repeat Families (AAARF) algorithm

Jeremy D DeBarry¹ , Renyi Liu¹^,2 and Jeffrey L Bennetzen¹

¹Department of Genetics, University of Georgia, Athens, GA 30602-7223, USA

²Current Address: Department of Botany and Plant Sciences, University of California, Riverside, CA 92521, USA

author email corresponding author email

BMC Bioinformatics 2008, 9:235doi:10.1186/1471-2105-9-235


Published:	13 May 2008

Additional files

Additional file 1:

AAARF Algorithm Perl Script. This is the AAARF algorithm. The file can be viewed in a text editor. Examples are BBedit for Macintosh and Wordpad for Windows. This file is also available at the project homepage https://sourceforge.net/projects/aaarf webcite.

Format: PL Size: 54KB Download file

Additional file 2:

AAARF Program Documentation. This is the AAARF algorithm documentation. The file is intended to aid in the use of the program and provides instructions for its use. The file can be viewed in a text editor. Examples are BBedit for Macintosh and Wordpad for Windows. This file is also available at the project homepage https://sourceforge.net/projects/aaarf webcite.

Format: TXT Size: 23KB Download file