Research article
Bioinformatic analyses of mammalian 5'-UTR sequence properties of mRNAs predicts alternative translation initiation sites
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* Corresponding authors: Faramarz Valafar faramarz@sciences.sdsu.edu - Vivian Hook vhook@ucsd.edu
- † Equal contributors
1 Computational Science Research Center, San Diego State University, San Diego, USA
2 Department of Computer Science, San Diego State University, San Diego, USA
3 Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, USA
4 Depts. of Pharmacology, Neuroscience, and Medicine, School of Medicine, Uiversity of California, San Diego, La Jolla, USA
BMC Bioinformatics 2008, 9:232 doi:10.1186/1471-2105-9-232
Published: 8 May 2008Additional files
Additional file 1:
Negative set of Mammalian AUG, non-ATIS, mRNA Sequences. A set of 500 sequences were selected from Mammalian species that translate with one or more AUG start sites. These sequences were selected from the validated RefSeq database.
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Additional file 2:
Provisional aTIS RefSeq mRNA Sequences. The provisional set of sequences were selected both from the annotated provisional non-AUG start sites and conserved non-AUG start sites found in aligned 120 bp fragments containing the alternative start sites from the positive aTIS training set.
Format: PDF Size: 26KB Download file
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