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Inferring the role of transcription factors in regulatory networks

Philippe Veber*, Carito Guziolowski, Michel Le Borgne, Ovidiu Radulescu and Anne Siegel

BMC Bioinformatics 2008, 9:228 doi:10.1186/1471-2105-9-228

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TF-centered downstream gene set enrichment analysis: Inference of causal regulators by integrating TF-DNA interactions and protein post-translational modifications information

Qi Liu, Yejun Tan, Tao Huang, Guohui Ding, Zhidong Tu, Lei Liu, Yixue Li, Hongyue Dai, Lu Xie BMC Bioinformatics 2010, 11(Suppl 11):S5 (14 December 2010)

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Integrated cellular network of transcription regulations and protein-protein interactions

Yu-Chao Wang, Bor-Sen Chen BMC Systems Biology 2010, 4:20 (8 March 2010)

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BioQuali Cytoscape plugin: analysing the global consistency of regulatory networks

Carito Guziolowski, Annabel Bourdé, Francois Moreews, Anne Siegel BMC Genomics 2009, 10:244 (26 May 2009)

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