Research article
Studying the functional conservation of cis-regulatory modules and their transcriptional output
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* Corresponding author: Denis C Bauer d.bauer@imb.uq.edu.au
Institute for Molecular Bioscience, University of Queensland, Brisbane, Qld. 4072 Australia
BMC Bioinformatics 2008, 9:220 doi:10.1186/1471-2105-9-220
Published: 29 April 2008Additional files
Additional file 1:
Comparison of parameters from different models. Table containing the parameters for the TFs after training was performed.
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Additional file 2:
Comparison of TFBS-maps in predicted MSE2 regions. Table containing a visualization of the TFBS-maps from the predicted MSE2 regions using our predictor.
Format: PDF Size: 46KB Download file
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Additional file 3:
Comparison of TFBS-maps in homologous MSE2 regions. Table containing a visualization of the TFBS-maps from homologous MSE2 regions.
Format: PDF Size: 46KB Download file
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Additional file 4:
Sequence conservation of homologous MSE2s. Multiple alignment of the homologous MSE2 region in the eight different Drosophila species.
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Additional file 5:
The Reinitz model and PWMs. Additional detail on the Reinitz model.
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Additional file 6:
Count matrices and logos of the used TFs. Table containing the count matrices and logos of the TFs used in this study.
Format: PDF Size: 44KB Download file
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