Table 1

Parameters used to generate 54 simulated data combinations of 1000 genes each
Simulated microarray data
Dataset
 AUC0
 # DE
A
 0.60
 100
B
 0.75
 100
C
 0.91
 100
D
 0.62
 200
E
 0.75
 200
F
 0.91
 200



Simulated biological knowledge
Knowledge
 β
 RC
1
 0.50
 0.91
2
 1.00
 0.91
3
 1.64
 0.91
4
 0.50
 2.27
5
 1.00
 2.27
6
 1.64
 2.27
7
 0.50
 4.55
8
 1.00
 4.55
9
 1.64
 4.55

Daigle and Altman BMC Bioinformatics 2008 9:214   doi:10.1186/1471-2105-9-214