Table 3

The performance of SVM models developed using pseudo amino acid composition (PseAAC).
Thr
 Pseudo Amino acid composition (hydrophobicity)
 Pseudo Amino acid composition (pI at 250 C.)


Sn*
 Sp
 Acc
 MCC
 Sn
 Sp
 Acc
 MCC
-1.0
 92.86
 58.17
 75.55
 0.54
 96.03
 44.44
 70.24
 0.47
-0.9
 92.06
 66.14
 79.13
 0.60
 94.44
 50.79
 72.62
 0.50
-0.8
 91.67
 72.91
 82.31
 0.66
 93.25
 59.13
 76.19
 0.56
-0.7
 90.08
 74.50
 82.31
 0.65
 92.46
 61.51
 76.98
 0.57
-0.6
 89.29
 77.29
 83.30
 0.67
 91.67
 65.08
 78.37
 0.59
-0.5
 88.89
 82.47
 85.69
 0.72
 91.67
 69.44
 80.56
 0.63
-0.4
 88.10
 85.26
 86.68
 0.73
 90.48
 75.40
 82.94
 0.67
-0.3
 86.11
 88.45
 87.28
 0.75
 89.29
 78.57
 83.93
 0.68
-0.2
 85.32
 90.04
 87.67
 0.75
 89.29
 80.16
 84.72
 0.70
-0.1
 85.32
 92.83
 89.07
 0.78
 88.89
 84.13
 86.51
 0.73
0.0
 83.73
 94.02
 88.87
 0.78
 87.70
 86.90
 87.30
 0.75
0.1
 82.94
 95.22
 89.07
 0.79
 86.90
 88.49
 87.70
 0.75
0.2
 81.75
 95.62
 88.67
 0.78
 86.11
 90.48
 88.29
 0.77
0.3
 81.75
 96.41
 89.07
 0.79
 84.13
 91.67
 87.90
 0.76
0.4
 81.35
 96.81
 89.07
 0.79
 83.33
 92.46
 87.90
 0.76
0.5
 80.56
 96.81
 88.67
 0.78
 82.54
 94.44
 88.49
 0.78
0.6
 78.57
 98.41
 88.47
 0.79
 81.35
 95.24
 88.29
 0.77
0.7
 76.98
 98.41
 87.67
 0.77
 79.76
 95.63
 87.70
 0.76
0.8
 73.02
 98.41
 85.69
 0.74
 78.17
 97.22
 87.70
 0.77
0.9
 68.25
 98.80
 83.50
 0.70
 73.02
 97.22
 85.12
 0.72
1.0
 62.30
 98.80
 80.52
 0.66
 67.06
 98.02
 82.54
 0.68

Verma et al. BMC Bioinformatics 2008 9:201   doi:10.1186/1471-2105-9-201