 Methodology articleNestedMICA as an ab initio protein motif discovery toolMutlu Doğruel1 1 Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1HH, UK 2 Wellcome Trust/Cancer Research UK Gurdon Institute, University of Cambridge, Tennis Court Road, Cambridge CB2 1QN, UK
BMC Bioinformatics 2008, 9:19doi:10.1186/1471-2105-9-19
Additional filesAdditional file 1: Motifs recovered by NestedMICA and MEME in the single-motif spiking tests, for motif set 2. This file contains a figure showing the second set of test motifs as recovered by the two compared programs, along with their cartesian distances to the original motifs and their MCC values. Format: PDF Size: 2.2MB Download file This file can be viewed with: Adobe Acrobat Reader Additional file 2: Motifs recovered by NestedMICA and MEME in the single-motif spiking tests, for motif set 3. This file contains a figure showing the third set of test motifs as recovered by the two compared programs, along with their cartesian distances to the original motifs and their MCC values. Format: PDF Size: 2.3MB Download file This file can be viewed with: Adobe Acrobat Reader Additional file 3: Sensitivity and specificity values for the motifs reported by NestedMICA and MEME. This file contains two tables showing sensitivity and specificity values of the compared programs in the single and multiple motif spiking tests. Format: PDF Size: 294KB Download file This file can be viewed with: Adobe Acrobat Reader |
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