LocateP: Genome-scale subcellular-location predictor for bacterial proteins

Miaomiao Zhou¹ , Jos Boekhorst¹^,4 , Christof Francke¹^,2 and Roland J Siezen¹^,2^,3

¹Centre for Molecular and Biomolecular Informatics, Radboud University Nijmegen Medical Centre, PO Box 9101, 6500 HB Nijmegen, The Netherlands

²TI Food and Nutrition, and Kluyver Centre for Genomics of Industrial Fermentation, Wageningen, The Netherlands

³NIZO Food Research, Ede, The Netherlands

⁴Department of Biology, Faculty of Science, Utrecht University, Utrecht, The Netherlands

author email corresponding author email

BMC Bioinformatics 2008, 9:173doi:10.1186/1471-2105-9-173


Published:	27 March 2008

Additional files

Additional file 1:

Flow chart and decision tree of the LocateP pipeline. The different SCL tools used at each decision step are indicated. The different SCLs distinguished are boxed in the middle; "Bacteriocin" signifies bacteriocin-like proteins secreted by non-classical pathways, identified by Bagel. a) all tools agreed, b) all possible hits, c) majority vote, d) 2–3 TM segments and C-terminus detected by LPxTG HMM.

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Additional file 2:

The LocateP predicted N-anchored and secreted proteins with known function in Bacillus subtilis.

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Additional file 3:

The LocateP predicted N-anchored and secreted proteins of unknown function in Bacillus subtilis.

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Additional file 4:

Literature references for other experimental evidence (Yes (O)) listed in additional file 2.

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