Prediction of enzyme function based on 3D templates of evolutionarily important amino acids

doi:10.1186/1471-2105-9-17

BMC Bioinformatics

Volume 9

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Kristensen DM
Ward RM
Lisewski AM
Erdin S
Chen BY
Fofanov VY
Kimmel M
Kavraki LE
Lichtarge O

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Kristensen DM
Ward RM
Lisewski AM
Erdin S
Chen BY
Fofanov VY
Kimmel M
Kavraki LE
Lichtarge O
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Research article

Prediction of enzyme function based on 3D templates of evolutionarily important amino acids

David M Kristensen¹^,2^* , R Matthew Ward¹^,2^* , Andreas Martin Lisewski¹ , Serkan Erdin¹ , Brian Y Chen³ , Viacheslav Y Fofanov⁴ , Marek Kimmel⁴ , Lydia E Kavraki²^,3^,5 and Olivier Lichtarge¹^,2

¹Department of Molecular and Human Genetics, Biophysics, Baylor College of Medicine, Houston, TX 77030, USA

²Graduate Program in Structural and Computational Biology and Molecular Biophysics, Baylor College of Medicine, Houston, TX 77030, USA

³Department of Computer Science, Rice University, Houston, Texas 77030, USA

⁴Department of Statistics, Rice University, Houston, Texas 77030, USA

⁵Department of Bioengineering, Rice University, Houston, Texas 77030, USA

author email corresponding author email* Contributed equally

BMC Bioinformatics 2008, 9:17doi:10.1186/1471-2105-9-17


Published:	11 January 2008

Additional files

Additional file 1:

Supplementary material (Supplementary Tables S1–4) is provided as an HTML-formatted webpage. Supplementary Table S1: PSI Set voting as sequence identity threshold of matched target pairs decreases. Supplementary Table S2: Training Set. Supplementary Table S3: PDB Set. Supplementary Table S4: PSI Set.

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