A comprehensive re-analysis of the Golden Spike data: Towards a benchmark for differential expression methods
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Correspondence: Richard D Pearson richard.pearson@postgrad.manchester.ac.uk
BMC Bioinformatics 2008, 9:164 doi:10.1186/1471-2105-9-164
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Software
puma: a Bioconductor package for propagating uncertainty in microarray analysis Richard D Pearson, Xuejun Liu, Guido Sanguinetti, Marta Milo, Neil D Lawrence, Magnus Rattray BMC Bioinformatics 2009, 10:211 (9 July 2009) The puma software suite is a freely available, unified Bioconductor package for propagating uncertainty in microarray analysis, giving improved performance compared to more traditional methods of differential expression detection, principal component analysis and clustering.
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Research
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Background correction using dinucleotide affinities improves the performance of GCRMA Raad Z Gharaibeh, Anthony A Fodor, Cynthia J Gibas BMC Bioinformatics 2008, 9:452 (23 October 2008) |