Table 1 

Splice junction prediction sensitivities of three different scoring models. 

Scoring Function 
Exact 
< 25 nt 


Longest InterAG Length 
49.5 
58.9 
Linear Ybias 
53.7 
65.9 
Polynomial Ybias 
53.3 
64.0 


InterAG Length + LDA* 
58.6 
72.1 
Linear Ybias** 
58.9 
74.3 
Polynomial Ybias** 
60.7 
74.3 


* Interpreted from [23] ** Using same search space as InterAG + Linear Discriminant Analysis Values are the ratio (%) of correct predictions among the 214 sequences in the test set, for exact predictions and predictions within 25 bases of the sequenced 5' splice junction. The upper half displays values obtained using a search space of 700 whereas the lower half displays predictions using the same query size as the linear discriminant analysis. 

Smith et al. BMC Bioinformatics 2008 9:158 doi:10.1186/147121059158 