Table 1

Splice junction prediction sensitivities of three different scoring models.

Scoring Function

Exact

< 25 nt


Longest Inter-AG Length

49.5

58.9

Linear Y-bias

53.7

65.9

Polynomial Y-bias

53.3

64.0


Inter-AG Length + LDA*

58.6

72.1

Linear Y-bias**

58.9

74.3

Polynomial Y-bias**

60.7

74.3


* Interpreted from [23]

** Using same search space as Inter-AG + Linear Discriminant Analysis

Values are the ratio (%) of correct predictions among the 214 sequences in the test set, for exact predictions and predictions within 25 bases of the sequenced 5' splice junction. The upper half displays values obtained using a search space of 700 whereas the lower half displays predictions using the same query size as the linear discriminant analysis.

Smith et al. BMC Bioinformatics 2008 9:158   doi:10.1186/1471-2105-9-158

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