|
Absolute and relative (in parentheses) concordances between different normalization algorithms applied to MAS5 expression values. The numbers of genes declared DE are determined using the local false discovery rate [8] at 0.1% limit. Percentages in parenthesis are relative to the method in the column headings. The last line reports the percentages of over-expressed genes among those declared DE. |
||||
| Global |
Invariantset |
Quantile |
Loess |
|
|
|
||||
| Global |
132 |
110 (0.82) |
93 (0.96) |
100 (0.96) |
| Invariantset |
110 (0.83) |
134 |
97 (1.00) |
103 (0.99) |
| Quantile |
93 (0.70) |
97 (0.72) |
97 |
92 (0.88) |
| Loess |
100 (0.76) |
103 (0.77) |
92 (0.95) |
104 |
|
|
||||
| % over-expressed |
0.88 |
0.93 |
0.9 |
0.93 |
Calza et al. BMC Bioinformatics 2008 9:140 doi:10.1186/1471-2105-9-140 |
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