Normalization of oligonucleotide arrays based on the least-variant set of genes

doi:10.1186/1471-2105-9-140

BMC Bioinformatics

Volume 9

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Research article

Normalization of oligonucleotide arrays based on the least-variant set of genes

Stefano Calza¹^,2 , Davide Valentini¹ and Yudi Pawitan¹

¹Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden

²Department of Biomedical Sciences and Biotechnology, University of Brescia, Italy

author email corresponding author email

BMC Bioinformatics 2008, 9:140doi:10.1186/1471-2105-9-140


Published:	5 March 2008

Additional files

Additional file 1:

Supplementary Report Normalization of oligonucleotide arrays based on the least-variant set of genes. This file contains some supplementary figures.

Format: PDF Size: 1.9MB Download file

This file can be viewed with: Adobe Acrobat Reader

Additional file 2:

Bioconductor Expression Assessment Tool for Affymetrix Oligonucleotide Arrays (affycomp). This report presents the automatic assessment of the LVS normalization method, with MAS5-style summarization, based on the Affymetrix HGU 95 spike-in experiment, generated by the Affycomp website [30]

Format: PDF Size: 1.7MB Download file

This file can be viewed with: Adobe Acrobat Reader

Additional file 3:

Bioconductor Expression Assessment Tool for Affymetrix Oligonucleotide Arrays (affycomp). This report presents the automatic assessment of the LVS normalization method, with RMA-style summarization, based on the Affymetrix HGU 95 spike-in experiment, generated by the Affycomp website [30]

Format: PDF Size: 1.5MB Download file

This file can be viewed with: Adobe Acrobat Reader

Additional file 4:

Bioconductor Expression Assessment Tool for Affymetrix Oligonucleotide Arrays (affycomp). This report presents the automatic assessment of the LVS normalization method, with MAS5-style summarization, based on the Affymetrix HGU 133 spike-in experiment, generated by the Affycomp website [30]

Format: PDF Size: 2.2MB Download file

This file can be viewed with: Adobe Acrobat Reader

Additional file 5:

Bioconductor Expression Assessment Tool for Affymetrix Oligonucleotide Arrays (affycomp). This report presents the automatic assessment of the LVS normalization method, with RMA-style summarization, based on the Affymetrix HGU 133 spike-in experiment, generated by the Affycomp website [30]

Format: PDF Size: 2.1MB Download file

This file can be viewed with: Adobe Acrobat Reader