Table 2

Genes in the identified prognostic signature. For each probe set the first column lists the subset of the eighty pairs which contain it. The pairs are ordered from 1 to 80 by their scores.

Pair Rank

Probe Set

Gene Symbol

Gene Title


1, 43

91816_f_at

RKHD1

ring finger and KH domain containing 1

1, 6, 73

204641_at

NEK2

NIMA (never in mitosis gene a)-related kinase 2

2

213139_at

SNAI2

snail homolog 2 (Drosophila)

2, 4, 9, 33

212188_at

KCTD12

potassium channel tetramerisation domain containing 12

3

212022_s_at

MKI67

antigen identified by monoclonal antibody Ki-67

3, 61, 80

219716_at

APOL6

apolipoprotein L, 6

4

205264_at

CD3EAP

CD3e molecule, epsilon associated protein

5

206687_s_at

PTPN6

protein tyrosine phosphatase, non-receptor type 6

5, 67

218009_s_at

PRC1

protein regulator of cytokinesis 1

6, 35, 39, 55

219579_at

RAB3IL1

RAB3A interacting protein (rabin3)-like 1

7

221824_s_at

MARCH8

membrane-associated ring finger (C3HC4) 8

7

209574_s_at

C18orf1

chromosome 18 open reading frame 1

8

210199_at

CRYAA

crystallin, alpha A

8, 24, 26, 31

219493_at

SHCBP1

SHC SH2-domain binding protein 1

9

204177_s_at

KLHL20

kelch-like 20 (Drosophila)

10, 34

203010_at

STAT5A

signal transducer and activator of transcription 5A

10

212747_at

ANKS1A

ankyrin repeat and sterile alpha motif domain containing 1A

11, 19, 21

205034_at

CCNE2

cyclin E2

11, 65

217427_s_at

HIRA

HIR histone cell cycle regulation defective homolog A (S. cerevisiae)

12, 46, 54, 74

222077_s_at

RACGAP1

Rac GTPase activating protein 1

12, 62

36545_s_at

SFI1

Sfi1 homolog, spindle assembly associated (yeast)

13, 17, 72

218883_s_at

MLF1IP

MLF1 interacting protein

13

203332_s_at

INPP5D

inositol polyphosphate-5-phosphatase, 145kDa

14, 15

211584_s_at

NPAT

nuclear protein, ataxia-telangiectasia locus

14

219512_at

C20orf172

chromosome 20 open reading frame 172

15

221193_s_at

ZCCHC10

zinc finger, CCHC domain containing 10

16

221521_s_at

GINS2

GINS complex subunit 2 (Psf2 homolog)

16

209671_x_at

TRA@///TRAC

T cell receptor alpha locus///T cell receptor alpha locus

17

208952_s_at

LARP5

La ribonucleoprotein domain family, member 5

18, 30

218726_at

DKFZp762E1312

hypothetical protein DKFZp762E1312

18, 51

211581_x_at

LST1

leukocyte specific transcript 1

19

221273_s_at

DKFZP761H1710

hypothetical protein DKFZp761H1710

20

205395_s_at

MRE11A

MRE11 meiotic recombination 11 homolog A (S. cerevisiae)

20, 59

214973_x_at

IGHD

immunoglobulin heavy constant delta

21, 27

211881_x_at

IGLJ3

immunoglobulin lambda joining 3

22

202602_s_at

HTATSF1

HIV-1 Tat specific factor 1

22

218143_s_at

SCAMP2

secretory carrier membrane protein 2

23

212911_at

DNAJC16

DnaJ (Hsp40) homolog, subfamily C, member 16

23

204817_at

ESPL1

extra spindle poles like 1 (S. cerevisiae)

24

215783_s_at

ALPL

alkaline phosphatase, liver/bone/kidney

25, 38, 39, 44, 52, 71

204825_at

MELK

maternal embryonic leucine zipper kinase

25

213689_x_at

RPL5

Ribosomal protein L5

26

206545_at

CD28

CD28 molecule

27

206364_at

KIF14

kinesin family member 14

28, 60, 61

208079_s_at

AURKA

aurora kinase A

28

214955_at

TMPRSS6

transmembrane protease, serine 6

29

210966_x_at

LARP1

La ribonucleoprotein domain family, member 1

29

218830_at

RPL26L1

ribosomal protein L26-like 1

30

204498_s_at

ADCY9

adenylate cyclase 9

31

206211_at

SELE

selectin E (endothelial adhesion molecule 1)

32, 34, 69

201890_at

RRM2

ribonucleotide reductase M2 polypeptide

32

219298_at

ECHDC3

enoyl Coenzyme A hydratase domain containing 3

33

204847_at

ZBTB11

zinc finger and BTB domain containing 11

35, 62

203214_x_at

CDC2

cell division cycle 2, G1 to S and G2 to M

36

204605_at

CGRRF1

cell growth regulator with ring finger domain 1

36

211251_x_at

NFYC

nuclear transcription factor Y, gamma

37, 65

213008_at

KIAA1794

KIAA1794

37, 73

210042_s_at

CTSZ

cathepsin Z

38

203595_s_at

IFIT5

interferon-induced protein with tetratricopeptide repeats 5

40

221529_s_at

PLVAP

plasmalemma vesicle associated protein

40

202114_at

SNX2

sorting nexin 2

41

211779_x_at

AP2A2

adaptor-related protein complex 2, alpha 2 subunit

41, 63

202324_s_at

ACBD3

acyl-Coenzyme A binding domain containing 3

42, 57

201821_s_at

TIMM17A

translocase of inner mitochondrial membrane 17 homolog A (yeast)

42

201551_s_at

LAMP1

lysosomal-associated membrane protein 1

43

48808_at

DHFR

dihydrofolate reductase

44

211643_x_at

LOC651961

Myosin-reactive immunoglobulin light chain variable region

45

210396_s_at

LOC440354

PI-3-kinase-related kinase SMG-1 pseudogene

45

201070_x_at

SF3B1

splicing factor 3b, subunit 1, 155kDa

46

207391_s_at

PIP5K1A

phosphatidylinositol-4-phosphate 5-kinase, type I, alpha

47

200800_s_at

HSPA1A

heat shock 70 kDa protein 1A

47

201009_s_at

TXNIP

thioredoxin interacting protein

48

203530_s_at

STX4

syntaxin 4

48, 50

218085_at

CHMP5

chromatin modifying protein 5

49, 68, 70

219555_s_at

C16orf60

chromosome 16 open reading frame 60

49

210419_at

BARX2

BarH-like homeobox 2

50

214119_s_at

FKBP1A

FK506 binding protein 1A, 12 kDa

51, 58

203362_s_at

MAD2L1

MAD2 mitotic arrest deficient-like 1 (yeast)

52

218910_at

TMEM16K

transmembrane protein 16K

53

208838_at

KIAA0829

KIAA0829 protein

53

212081_x_at

BAT2

HLA-B associated transcript 2

54

202115_s_at

NOC2L

nucleolar complex associated 2 homolog (S. cerevisiae)

55

209714_s_at

CDKN3

cyclin-dependent kinase inhibitor 3 (CDK2-associated dual specificity phosphatase)

56

205701_at

IPO8

importin 8

56

205063_at

SIP1

survival of motor neuron protein interacting protein 1

57

200918_s_at

SRPR

signal recognition particle receptor ('docking protein')

58

212527_at

D15Wsu75e

DNA segment, Chr 15, Wayne State University 75, expressed

59

204244_s_at

DBF4

DBF4 homolog (S. cerevisiae)

60

214508_x_at

CREM

cAMP responsive element modulator

63

200787_s_at

PEA15

phosphoprotein enriched in astrocytes 15

64

203764_at

DLG7

discs, large homolog 7 (Drosophila)

64

205877_s_at

ZC3H7B

zinc finger CCCH-type containing 7B

66

200848_at

AHCYL1

S-adenosylhomocysteine hydrolase-like 1

66

201091_s_at

CBX3

chromobox homolog 3 (HP1 gamma homolog, Drosophila)

67

64064_at

GIMAP5

GTPase, IMAP family member 5

68

211649_x_at

IGHG1

Immunoglobulin heavy constant gamma 1 (G1m marker)

69

204398_s_at

EML2

echinoderm microtubule associated protein like 2

70

220433_at

PRRG3

proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)

71

219169_s_at

TFB1M

transcription factor B1, mitochondrial

72

34689_at

TREX1

three prime repair exonuclease 1

74

212604_at

MRPS31

mitochondrial ribosomal protein S31

75

213907_at

EEF1E1

Eukaryotic translation elongation factor 1 epsilon 1

75

209622_at

STK16

serine/threonine kinase 16

76

209716_at

CSF1

colony stimulating factor 1 (macrophage)

76

219575_s_at

PDF

peptide deformylase (mitochondrial)

77

219328_at

DDX31

DEAD (Asp-Glu-Ala-Asp) box polypeptide 31

77

213121_at

SNRP70

small nuclear ribonucleoprotein 70 kDa polypeptide (RNP antigen)

78

218870_at

ARHGAP15

Rho GTPase activating protein 15

78

219105_x_at

ORC6L

origin recognition complex, subunit 6 like (yeast)

79

216510_x_at

IGHA1

immunoglobulin heavy constant alpha 1

79

215207_x_at

YDD19

YDD19 protein

80

219918_s_at

ASPM

asp (abnormal spindle)-like, microcephaly associated (Drosophila)


Xu et al. BMC Bioinformatics 2008 9:125   doi:10.1186/1471-2105-9-125

Open Data