Corpus annotation for mining biomedical events from literature
-
* Corresponding author: Jin-Dong Kim jdkim@is.s.u-tokyo.ac.jp
BMC Bioinformatics 2008, 9:10 doi:10.1186/1471-2105-9-10
Accesses
- Last 30 days: 193 accesses
- Last 365 days: 1686 accesses
- All time: 11112 accesses
Cited by
BioMed Central: 22 citations
|
Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011 Sampo Pyysalo, Tomoko Ohta, Rafal Rak, Dan Sullivan, Chunhong Mao, Chunxia Wang, Bruno Sobral, Jun'ichi Tsujii, Sophia Ananiadou BMC Bioinformatics 2012, 13(Suppl 11):S2 (26 June 2012) |
|
Constructing a semantic predication gold standard from the biomedical literature Halil Kilicoglu, Graciela Rosemblat, Marcelo Fiszman, Thomas C Rindflesch BMC Bioinformatics 2011, 12:486 (20 December 2011) |
|
U-Compare bio-event meta-service: compatible BioNLP event extraction services Yoshinobu Kano, Jari Björne, Filip Ginter, Tapio Salakoski, Ekaterina Buyko, Udo Hahn, K Bretonnel Cohen, Karin Verspoor, Christophe Roeder, Lawrence E Hunter, Halil Kilicoglu, Sabine Bergler, Sofie Van Landeghem, Thomas Van Parys, Yves Van de Peer, Makoto Miwa, Sophia Ananiadou, Mariana Neves, Alberto Pascual-Montano, Arzucan Özgür, Dragomir R Radev, Sebastian Riedel, Rune Sætre, Hong-Woo Chun, Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii BMC Bioinformatics 2011, 12:481 (18 December 2011) |
|
Survival models with preclustered gene groups as covariates Kai Kammers, Michel Lang, Jan G Hengstler, Marcus Schmidt, Jörg Rahnenführer BMC Bioinformatics 2011, 12:478 (16 December 2011) |
|
Enriching a biomedical event corpus with meta-knowledge annotation Paul Thompson, Raheel Nawaz, John McNaught, Sophia Ananiadou BMC Bioinformatics 2011, 12:393 (10 October 2011) An annotation scheme for meta-knowledge enrichment of biomedical event corpora achieves high levels of inter-annotator agreement when applied to the GENIA event corpus, and facilitates more sophisticated training of information extraction systems.
|
|
Veronika Vincze, György Szarvas, György Móra, Tomoko Ohta, Richárd Farkas Journal of Biomedical Semantics 2011, 2(Suppl 5):S8 (6 October 2011) |
|
Coreference based event-argument relation extraction on biomedical text Katsumasa Yoshikawa, Sebastian Riedel, Tsutomu Hirao, Masayuki Asahara, Yuji Matsumoto Journal of Biomedical Semantics 2011, 2(Suppl 5):S6 (6 October 2011) |
|
An analysis of gene/protein associations at PubMed scale Sampo Pyysalo, Tomoko Ohta, Jun’ichi Tsujii Journal of Biomedical Semantics 2011, 2(Suppl 5):S5 (6 October 2011) |
|
Medie and Info-pubmed: 2010 update Tomoko Ohta, Takuya Matsuzaki, Naoaki Okazaki, Makoto Miwa, Rune Sætre, Sampo Pyysalo, Jun’ichi Tsujii BMC Bioinformatics 2010, 11(Suppl 5):P7 (6 October 2010) |
|
ISDB: Interaction Sentence Database Michael A Bauer, Robert E Belford, Jing Ding, Daniel Berleant BMC Research Notes 2010, 3:122 (3 May 2010) This article is part of a collection on Databases |
|
Aurélie Bonin, Margot Paris, Guillaume Tetreau, Jean-Philippe David, Laurence Després BMC Genomics 2009, 10:551 (21 November 2009) |
|
BioDEAL: community generation of biological annotations Paul Breimyer, Nathan Green, Vinay Kumar, Nagiza F Samatova BMC Medical Informatics and Decision Making 2009, 9(Suppl 1):S5 (3 November 2009) |
|
Construction of an annotated corpus to support biomedical information extraction Paul Thompson, Syed A Iqbal, John McNaught, Sophia Ananiadou BMC Bioinformatics 2009, 10:349 (23 October 2009) |
|
Challenges for automatically extracting molecular interactions from full-text articles Tara McIntosh, James R Curran BMC Bioinformatics 2009, 10:311 (24 September 2009) |
|
Anna Bauer-Mehren, Laura I Furlong, Michael Rautschka, Ferran Sanz BMC Bioinformatics 2009, 10(Suppl 8):S6 (27 August 2009) |
|
A realistic assessment of methods for extracting gene/protein interactions from free text Renata Kabiljo, Andrew B Clegg, Adrian J Shepherd BMC Bioinformatics 2009, 10:233 (28 July 2009) |
|
Open Biomedical Ontology-based Medline exploration Weijian Xuan, Manhong Dai, Barbara Mirel, Jean Song, Brian Athey, Stanley J Watson, Fan Meng BMC Bioinformatics 2009, 10(Suppl 5):S6 (6 May 2009) |
|
The BioScope corpus: biomedical texts annotated for uncertainty, negation and their scopes Veronika Vincze, György Szarvas, Richárd Farkas, György Móra, János Csirik BMC Bioinformatics 2008, 9(Suppl 11):S9 (19 November 2008) |
|
Antti Airola, Sampo Pyysalo, Jari Björne, Tapio Pahikkala, Filip Ginter, Tapio Salakoski BMC Bioinformatics 2008, 9(Suppl 11):S2 (19 November 2008) |
|
BibGlimpse: The case for a light-weight reprint manager in distributed literature research Thomas Tüchler, Golda Velez, Alexandra Graf, David P Kreil BMC Bioinformatics 2008, 9:406 (1 October 2008) |
|
Large-scale directional relationship extraction and resolution Cory B Giles, Jonathan D Wren BMC Bioinformatics 2008, 9(Suppl 9):S11 (12 August 2008) |
|
New challenges for text mining: mapping between text and manually curated pathways Kanae Oda, Jin-Dong Kim, Tomoko Ohta, Daisuke Okanohara, Takuya Matsuzaki, Yuka Tateisi, Jun'ichi Tsujii BMC Bioinformatics 2008, 9(Suppl 3):S5 (11 April 2008) |