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BMC Bioinformatics publishes selected collections of research articles, conference proceedings, reviews and reports as supplements, which are free to access online. All articles published in supplements are subject to peer review; meeting abstracts undergo review and selection by the conference. Find out more about publishing a supplement with BioMed Central.

Volume 8 Supplement 7

Proceedings of the Fourth Annual MCBIOS Conference. Computational Frontiers in Biomedicine

Proceedings

Fourth Annual MCBIOS Conference. Computational Frontiers in Biomedicine

New Orleans, LA, USA

1-3 February 2007

Edited by Dawn Wilkins, Yuriy Gusev, Raja Loganantharaj, Susan Bridges, Stephen Winters-Hilt, Jonathan D Wren (Senior Editor)

Conference website

Introduction   Open Access

Proceedings of the Fourth Annual Conference of the MidSouth Computational Biology and Bioinformatics Society

Dawn Wilkins, Yuriy Gusev, Raja Loganantharaj, Susan Bridges, Stephen Winters-Hilt, Jonathan D Wren BMC Bioinformatics 2007, 8(Suppl 7):S1 (1 November 2007)

Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Systems biology approach for mapping the response of human urothelial cells to infection by Enterococcus faecalis

Mikhail G Dozmorov, Kimberly D Kyker, Ricardo Saban, Nathan Shankar, Arto S Baghdayan, Michael B Centola, Robert E Hurst BMC Bioinformatics 2007, 8(Suppl 7):S2 (1 November 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Metabonomics evaluations of age-related changes in the urinary compositions of male Sprague Dawley rats and effects of data normalization methods on statistical and quantitative analysis

Laura K Schnackenberg, Jinchun Sun, Parvaneh Espandiari, Ricky D Holland, Joseph Hanig, Richard D Beger BMC Bioinformatics 2007, 8(Suppl 7):S3 (1 November 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Gene expression changes induced by the tumorigenic pyrrolizidine alkaloid riddelliine in liver of Big Blue rats

Nan Mei, Lei Guo, Ruqing Liu, James C Fuscoe, Tao Chen BMC Bioinformatics 2007, 8(Suppl 7):S4 (1 November 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Structure and function predictions of the Msa protein in Staphylococcus aureus

Vijayaraj Nagarajan, Mohamed O Elasri BMC Bioinformatics 2007, 8(Suppl 7):S5 (1 November 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access Highly Accessed

Statistical tools for transgene copy number estimation based on real-time PCR

Joshua S Yuan, Jason Burris, Nathan R Stewart, Ayalew Mentewab, C Neal Stewart BMC Bioinformatics 2007, 8(Suppl 7):S6 (1 November 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Cloning, analysis and functional annotation of expressed sequence tags from the Earthworm Eisenia fetida

Mehdi Pirooznia, Ping Gong, Xin Guan, Laura S Inouye, Kuan Yang, Edward J Perkins, Youping Deng BMC Bioinformatics 2007, 8(Suppl 7):S7 (1 November 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Robust clustering in high dimensional data using statistical depths

Yuanyuan Ding, Xin Dang, Hanxiang Peng, Dawn Wilkins BMC Bioinformatics 2007, 8(Suppl 7):S8 (1 November 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

The α-Hemolysin nanopore transduction detector – single-molecule binding studies and immunological screening of antibodies and aptamers

Stephen Winters-Hilt BMC Bioinformatics 2007, 8(Suppl 7):S9 (1 November 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Nanopore current transduction analysis of protein binding to non-terminal and terminal DNA regions: analysis of transcription factor binding, retroviral DNA terminus dynamics, and retroviral integrase-DNA binding

Stephen Winters-Hilt, Amanda Davis, Iftekhar Amin, Eric Morales BMC Bioinformatics 2007, 8(Suppl 7):S10 (1 November 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Preliminary nanopore cheminformatics analysis of aptamer-target binding strength

Karen Thomson, Iftekhar Amin, Eric Morales, Stephen Winters-Hilt BMC Bioinformatics 2007, 8(Suppl 7):S11 (1 November 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Analysis of nanopore detector measurements using Machine-Learning methods, with application to single-molecule kinetic analysis

Matthew Landry, Stephen Winters-Hilt BMC Bioinformatics 2007, 8(Suppl 7):S12 (1 November 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Comparison of probabilistic Boolean network and dynamic Bayesian network approaches for inferring gene regulatory networks

Peng Li, Chaoyang Zhang, Edward J Perkins, Ping Gong, Youping Deng BMC Bioinformatics 2007, 8(Suppl 7):S13 (1 November 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Duration learning for analysis of nanopore ionic current blockades

Alexander Churbanov, Carl Baribault, Stephen Winters-Hilt BMC Bioinformatics 2007, 8(Suppl 7):S14 (1 November 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Analysis of circadian pattern reveals tissue-specific alternative transcription in leptin signaling pathway

Andrey A Ptitsyn, Jeffrey M Gimble BMC Bioinformatics 2007, 8(Suppl 7):S15 (1 November 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access Highly Accessed

Computational analysis of biological functions and pathways collectively targeted by co-expressed microRNAs in cancer

Yuriy Gusev, Thomas D Schmittgen, Megan Lerner, Russell Postier, Daniel Brackett BMC Bioinformatics 2007, 8(Suppl 7):S16 (1 November 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Automatic delineation of malignancy in histopathological head and neck slides

Mutlu Mete, Xiaowei Xu, Chun-Yang Fan, Gal Shafirstein BMC Bioinformatics 2007, 8(Suppl 7):S17 (1 November 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

SVM clustering

Stephen Winters-Hilt, Sam Merat BMC Bioinformatics 2007, 8(Suppl 7):S18 (1 November 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

A novel, fast, HMM-with-Duration implementation – for application with a new, pattern recognition informed, nanopore detector

Stephen Winters-Hilt, Carl Baribault BMC Bioinformatics 2007, 8(Suppl 7):S19 (1 November 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Proceedings   Open Access

Nanopore-based kinetics analysis of individual antibody-channel and antibody-antigen interactions

Stephen Winters-Hilt, Eric Morales, Iftekhar Amin, Alexander Stoyanov BMC Bioinformatics 2007, 8(Suppl 7):S20 (1 November 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

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