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BMC Bioinformatics publishes selected collections of research articles, conference proceedings, reviews and reports as supplements, which are free to access online. All articles published in supplements are subject to peer review; meeting abstracts undergo review and selection by the conference. Find out more about publishing a supplement with BioMed Central.

Volume 8 Supplement 1

Italian Society of Bioinformatics (BITS): Annual Meeting 2006

Research

Italian Society of Bioinformatics (BITS): Annual Meeting 2006

Bologna, Italy

28-29 April, 2006

Edited by Rita Casadio, Manuela Helmer-Citterich, Graziano Pesole

Conference website

Introduction   Open Access

Bioinformatics in Italy: BITS2006, the third annual meeting of the Italian Society of Bioinformatics

Rita Casadio, Manuela Helmer-Citterich, Graziano Pesole BMC Bioinformatics 2007, 8(Suppl 1):S1 (8 March 2007)

Full text | PDF

Research   Open Access

BioWMS: a web-based Workflow Management System for bioinformatics

Ezio Bartocci, Flavio Corradini, Emanuela Merelli, Lorenzo Scortichini BMC Bioinformatics 2007, 8(Suppl 1):S2 (8 March 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

A computational approach for detecting peptidases and their specific inhibitors at the genome level

Lisa Bartoli, Remo Calabrese, Piero Fariselli, Damiano G Mita, Rita Casadio BMC Bioinformatics 2007, 8(Suppl 1):S3 (8 March 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

ProtNet: a tool for stochastic simulations of protein interaction networks dynamics

Massimo Bernaschi, Filippo Castiglione, Alessandra Ferranti, Caius Gavrila, Michele Tinti, Gianni Cesareni BMC Bioinformatics 2007, 8(Suppl 1):S4 (8 March 2007)

Abstract | Full text | PDF | PubMed

Research   Open Access Highly Accessed

Cross platform microarray analysis for robust identification of differentially expressed genes

Roberta Bosotti, Giuseppe Locatelli, Sandra Healy, Emanuela Scacheri, Luca Sartori, Ciro Mercurio, Raffaele Calogero, Antonella Isacchi BMC Bioinformatics 2007, 8(Suppl 1):S5 (8 March 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

The MEPS server for identifying protein conformational epitopes

Tiziana Castrignanò, Paolo De Meo, Danilo Carrabino, Massimilano Orsini, Matteo Floris, Anna Tramontano BMC Bioinformatics 2007, 8(Suppl 1):S6 (8 March 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

A Grid-based solution for management and analysis of microarrays in distributed experiments

Ivan Porro, Livia Torterolo, Luca Corradi, Marco Fato, Adam Papadimitropoulos, Silvia Scaglione, Andrea Schenone, Federica Viti BMC Bioinformatics 2007, 8(Suppl 1):S7 (8 March 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

The BioPrompt-box: an ontology-based clustering tool for searching in biological databases

Claudio Corsi, Paolo Ferragina, Roberto Marangoni BMC Bioinformatics 2007, 8(Suppl 1):S8 (8 March 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Gene models from ESTs (GeneModelEST): an application on the Solanum lycopersicum genome

Nunzio D'Agostino, Alessandra Traini, Luigi Frusciante, Maria Chiusano BMC Bioinformatics 2007, 8(Suppl 1):S9 (8 March 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Significance analysis of microarray transcript levels in time series experiments

Barbara Di Camillo, Gianna Toffolo, Sreekumaran K Nair, Laura J Greenlund, Claudio Cobelli BMC Bioinformatics 2007, 8(Suppl 1):S10 (8 March 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

ProCMD: a database and 3D web resource for protein C mutants

Pasqualina D'Ursi, Francesca Marino, Andrea Caprera, Luciano Milanesi, Elena M Faioni, Ermanna Rovida BMC Bioinformatics 2007, 8(Suppl 1):S11 (8 March 2007)

Abstract | Full text | PDF | PubMed

Research   Open Access

On the origin and evolution of biosynthetic pathways: integrating microarray data with structure and organization of the Common Pathway genes

Marco Fondi, Matteo Brilli, Renato Fani BMC Bioinformatics 2007, 8(Suppl 1):S12 (8 March 2007)

Abstract | Full text | PDF | PubMed

Research   Open Access

ESTuber db: an online database for Tuber borchii EST sequences

Barbara Lazzari, Andrea Caprera, Cristian Cosentino, Alessandra Stella, Luciano Milanesi, Angelo Viotti BMC Bioinformatics 2007, 8(Suppl 1):S13 (8 March 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Statistical analysis of genomic protein family and domain controlled annotations for functional investigation of classified gene lists

Marco Masseroli, Elisa Bellistri, Andrea Franceschini, Francesco Pinciroli BMC Bioinformatics 2007, 8(Suppl 1):S14 (8 March 2007)

Abstract | Full text | PDF | PubMed

Research   Open Access

Environment specific substitution tables for thermophilic proteins

K Mizuguchi, M Sele, MV Cubellis BMC Bioinformatics 2007, 8(Suppl 1):S15 (8 March 2007)

Abstract | Full text | PDF | PubMed

Research   Open Access

Correlation analysis reveals the emergence of coherence in the gene expression dynamics following system perturbation

Nicola Neretti, Daniel Remondini, Marc Tatar, John M Sedivy, Michela Pierini, Dawn Mazzatti, Jonathan Powell, Claudio Franceschi, Gastrone C Castellani BMC Bioinformatics 2007, 8(Suppl 1):S16 (8 March 2007)

Abstract | Full text | PDF | PubMed

Research   Open Access

Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data

Davide Rambaldi, Barbara Felice, Viviane Praz, Philip Bucher, Davide Cittaro, Alessandro Guffanti BMC Bioinformatics 2007, 8(Suppl 1):S17 (8 March 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

SYMBIOmatics: Synergies in Medical Informatics and Bioinformatics – exploring current scientific literature for emerging topics

Dietrich Rebholz-Schuhman, Graham Cameron, Dominic Clark, Erik van Mulligen, Jean-Louis Coatrieux, Eva Del Hoyo Barbolla, Fernando Martin-Sanchez, Luciano Milanesi, Ivan Porro, Francesco Beltrame, Ioannis Tollis, Johan Van der Lei BMC Bioinformatics 2007, 8(Suppl 1):S18 (8 March 2007)

Abstract | Full text | PDF | PubMed

Research   Open Access

Biowep: a workflow enactment portal for bioinformatics applications

Paolo Romano, Ezio Bartocci, Guglielmo Bertolini, Flavio De Paoli, Domenico Marra, Giancarlo Mauri, Emanuela Merelli, Luciano Milanesi BMC Bioinformatics 2007, 8(Suppl 1):S19 (8 March 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

p53FamTaG: a database resource of human p53, p63 and p73 direct target genes combining in silico prediction and microarray data

Elisabetta Sbisà, Domenico Catalano, Giorgio Grillo, Flavio Licciulli, Antonio Turi, Sabino Liuni, Graziano Pesole, Anna De Grassi, Mariano Caratozzolo, Anna D'Erchia, Beatriz Navarro, Apollonia Tullo, Cecilia Saccone, Andreas Gisel BMC Bioinformatics 2007, 8(Suppl 1):S20 (8 March 2007)

Abstract | Full text | PDF | PubMed

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