Table 9

Results: Level Specific Thresholds. The table shows for example that we find improvements at level 2 for both MF and BP but not for level 3.

Hierarchy
Split
Level
Original FScore
Threshold
Final FScore

MF
1
2
0.3299
-0.8
0.3665
MF
2
2
0.2782
-0.83
0.2973
MF
3
2
0.3298
-0.78
0.373
MF
4
2
0.3484
-0.81
0.373
MF
5
2
0.3016
-0.78
0.3263
MF
avg
2
0.3176
na
0.341 (+7.4%)

MF
1
3
0.3347
-0.87
0.3063
MF
2
3
0.3178
-0.84
0.3301
MF
3
3
0.4243
-0.88
0.3760
MF
4
3
0.4263
-0.87
0.3823
MF
5
3
0.3444
-0.86
0.3464
MF
avg
3
0.3695
na
0.3482 (-5.8%)

BP
1
2
0.2542
-0.87
0.2542
BP
2
2
0.2951
-0.89
0.2989
BP
3
2
0.2261
-0.89
0.2027
BP
4
2
0.1609
-0.87
0.2319
BP
5
2
0.1507
-0.88
0.1494
BP
avg
2
0.2174
na
0.2274 (+4.6%)

BP
1
3
0.2916
-0.86
0.3020
BP
2
3
0.3145
-0.83
0.3455
BP
3
3
0.3496
-0.82
0.3030
BP
4
3
0.3128
-0.83
0.3164
BP
5
3
0.3209
-0.83
0.3529
BP
avg
3
0.3179
na
0.324 (+1.9%)

Srinivasan and Qiu BMC Bioinformatics 2007 8(Suppl 9):S3   doi:10.1186/1471-2105-8-S9-S3