|
Performance by Level of Hierarchy. The table shows that level of hierarchy makes a difference. For example, with MF and BP the more difficult classification decisions are at the higher levels. |
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| Hierarchy |
Level |
# of Codes |
Scores |
||
| Recall |
Precision |
FScore |
|||
|
|
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| MF |
1 |
4 |
0.3176 |
0.1786 |
0.2205 |
| MF |
2 |
26 |
0.4846 |
0.2666 |
0.3176 |
| MF |
3 |
41 |
0.5261 |
0.3145 |
0.3695 |
| MF |
4 |
50 |
0.6780 |
0.4449 |
0.5066 |
| MF |
5 |
57 |
0.7799 |
0.4936 |
0.5732 |
| MF |
6 |
17 |
0.8937 |
0.5548 |
0.6505 |
| MF |
7 |
11 |
0.6961 |
0.3876 |
0.4728 |
| MF |
8 |
4 |
0.675 |
0.475 |
0.5233 |
| MF |
9 |
2 |
0.8 |
0.6 |
0.6667 |
|
|
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| CC |
1 |
1 |
0.3171 |
0.2235 |
0.2537 |
| CC |
2 |
20 |
0.6476 |
0.4017 |
0.4675 |
| CC |
3 |
25 |
0.6062 |
0.349 |
0.4089 |
| CC |
4 |
26 |
0.5547 |
0.306 |
0.3741 |
| CC |
5 |
14 |
0.5502 |
0.2832 |
0.3622 |
| CC |
6 |
6 |
0.3955 |
0.2717 |
0.3135 |
| CC |
7 |
1 |
1 |
0.7917 |
0.8667 |
|
|
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| BP |
1 |
3 |
0.1354 |
0.0481 |
0.0704 |
| BP |
2 |
10 |
0.3327 |
0.1767 |
0.2174 |
| BP |
3 |
34 |
0.5164 |
0.2517 |
0.3179 |
| BP |
4 |
54 |
0.4849 |
0.2563 |
0.3119 |
| BP |
5 |
49 |
0.4681 |
0.2516 |
0.3093 |
| BP |
6 |
52 |
0.4555 |
0.2734 |
0.3139 |
| BP |
7 |
51 |
0.5863 |
0.3251 |
0.3921 |
| BP |
8 |
21 |
0.4677 |
0.2834 |
0.3301 |
| BP |
9 |
8 |
0.4698 |
0.2840 |
0.3316 |
Srinivasan and Qiu BMC Bioinformatics 2007 8(Suppl 9):S3 doi:10.1186/1471-2105-8-S9-S3 |
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