Table 4

Sets of features that are emitted by transitions in the FSM.

Sets of features emitted by FSM transition


Label

Features

Description


#0

0

Coil defined as zero-energy

#1

<a onClick="popup('http://www.biomedcentral.com/1471-2105/8/S5/S3/mathml/M17','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/8/S5/S3/mathml/M17">View MathML</a>

End of helix processing (C-cap)

#2

<a onClick="popup('http://www.biomedcentral.com/1471-2105/8/S5/S3/mathml/M18','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/8/S5/S3/mathml/M18">View MathML</a>

Start of helix processing (N-cap)

#3

<a onClick="popup('http://www.biomedcentral.com/1471-2105/8/S5/S3/mathml/M19','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/8/S5/S3/mathml/M19">View MathML</a>

Normal helix residue

#4

<a onClick="popup('http://www.biomedcentral.com/1471-2105/8/S5/S3/mathml/M19','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/8/S5/S3/mathml/M19">View MathML</a>

+ A

Helix after very short coil

#5

<a onClick="popup('http://www.biomedcentral.com/1471-2105/8/S5/S3/mathml/M19','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/8/S5/S3/mathml/M19">View MathML</a>

+ B

Helix after short coil


Ri denotes the residue at position i in the protein, and n is the current position of the FSM.

Gassend et al. BMC Bioinformatics 2007 8(Suppl 5):S3   doi:10.1186/1471-2105-8-S5-S3

Open Data