Table 1

c-HSP status definition.
cHSP status
 exact match
partial match
internal match
undefined edges
e-HSP overlapping introns





Unchained e-HSP
Chained e-HSP




Confirmed
 X
 OR
 X
 OR
 X
 AND
 0
 AND
 0
 AND
 0
Undefined
 X
 OR
 X
 OR
 X
 AND
 0
 AND
 X
 AND
 0
Ambiguous
 X
 OR
 X
 OR
 X
 AND
 X
 OR
 X
 AND
 X

The definition of the status of a c-HSP is the result of all the pairwise comparisons versus e-HSP aligned in the genomic region. X indicates at least one occurrence of the corresponding instance. To define the c-HSP status Boolean operators have been used.

D'Agostino et al. BMC Bioinformatics 2007 8(Suppl 1):S9   doi:10.1186/1471-2105-8-S1-S9