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Including probe-level uncertainty in model-based gene expression clustering

Xuejun Liu, Kevin K Lin, Bogi Andersen and Magnus Rattray*

BMC Bioinformatics 2007, 8:98 doi:10.1186/1471-2105-8-98

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Research article   Open Access

Transcriptional profiling of bovine intervertebral disc cells: implications for identification of normal and degenerate human intervertebral disc cell phenotypes

Ben M Minogue, Stephen M Richardson, Leo AH Zeef, Anthony J Freemont, Judith A Hoyland Arthritis Research & Therapy 2010, 12:R22 (11 February 2010)

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puma: a Bioconductor package for propagating uncertainty in microarray analysis

Richard D Pearson, Xuejun Liu, Guido Sanguinetti, Marta Milo, Neil D Lawrence, Magnus Rattray BMC Bioinformatics 2009, 10:211 (9 July 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

The puma software suite is a freely available, unified Bioconductor package for propagating uncertainty in microarray analysis, giving improved performance compared to more traditional methods of differential expression detection, principal component analysis and clustering.

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