Research article  

Evolutionarily conserved bias of amino-acid usage refines the definition of PDZ-binding motif

Takahiko Chimura, Thomas Launey, Masao Ito BMC Genomics 2011, 12:300 (8 June 2011)

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Research article  

Robust extraction of functional signals from gene set analysis using a generalized threshold free scoring function

Petri Törönen, Pauli J Ojala, Pekka Marttinen, Liisa Holm BMC Bioinformatics 2009, 10:307 (23 September 2009)

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Software  

SNAD: sequence name annotation-based designer

Igor A Sidorov, Denis A Reshetov, Alexander E Gorbalenya BMC Bioinformatics 2009, 10:251 (14 August 2009)

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Database  

DDEC: Dragon database of genes implicated in esophageal cancer

Magbubah Essack, Aleksandar Radovanovic, Ulf Schaefer, Sebastian Schmeier, Sundararajan V Seshadri, Alan Christoffels, Mandeep Kaur, Vladimir B Bajic BMC Cancer 2009, 9:219 (6 July 2009)

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Methodology article  

EFICAz²: enzyme function inference by a combined approach enhanced by machine learning

Adrian K Arakaki, Ying Huang, Jeffrey Skolnick BMC Bioinformatics 2009, 10:107 (13 April 2009)

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Software  

ArrayIDer: automated structural re-annotation pipeline for DNA microarrays

Bart HJ van den Berg, Jay H Konieczka, Fiona M McCarthy, Shane C Burgess BMC Bioinformatics 2009, 10:30 (23 January 2009)

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Software  

CORE_TF: a user-friendly interface to identify evolutionary conserved transcription factor binding sites in sets of co-regulated genes

Matthew S Hestand, Michiel van Galen, Michel P Villerius, Gert-Jan B van Ommen, Johan T den Dunnen, Peter AC 't Hoen BMC Bioinformatics 2008, 9:495 (26 November 2008)

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Research article  

Pro-neural transcription factors as cancer markers

Maria Vias, Charlie E Massie, Philip East, Helen Scott, Anne Warren, Zongxiang Zhou, Alexander Nikitin, David E Neal, Ian G Mills BMC Medical Genomics 2008, 1:17 (19 May 2008)

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Research article  

Experimental-confirmation and functional-annotation of predicted proteins in the chicken genome

Teresia J Buza, Fiona M McCarthy, Shane C Burgess BMC Genomics 2007, 8:425 (19 November 2007)

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Database  

DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis

Brad T Sherman, Da Huang, Qina Tan, Yongjian Guo, Stephan Bour, David Liu, Robert Stephens, Michael W Baseler, H Clifford Lane, Richard A Lempicki BMC Bioinformatics 2007, 8:426 (2 November 2007)

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Software  

The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases

Richard G Côté, Philip Jones, Lennart Martens, Samuel Kerrien, Florian Reisinger, Quan Lin, Rasko Leinonen, Rolf Apweiler, Henning Hermjakob BMC Bioinformatics 2007, 8:401 (18 October 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | 1 comment

Software  

GeneSrF and varSelRF: a web-based tool and R package for gene selection and classification using random forest

Ramón Diaz-Uriarte BMC Bioinformatics 2007, 8:328 (3 September 2007)

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