Orthology prediction at scalable resolution by phylogenetic tree analysis
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* Corresponding author: Martijn A Huynen huynen@cmbi.ru.nl
BMC Bioinformatics 2007, 8:83 doi:10.1186/1471-2105-8-83
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BioMed Central: 9 citations
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Research
Radek Szklarczyk, Bas FJ Wanschers, Thomas D Cuypers, John J Esseling, Moniek Riemersma, Mariël AM van den Brand, Jolein Gloerich, Edwin Lasonder, Lambert P van den Heuvel, Leo G Nijtmans, Martijn A Huynen Genome Biology 2012, 13:R12 (22 February 2012) An iterative orthology prediction method identifies previously uncharacterized human orthologs of yeast mitochondrial proteins that are robust to multiple validation approaches
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Proceedings
Ting-wen Chen, Timothy H Wu, Wailap V Ng, Wen-chang Lin BMC Bioinformatics 2010, 11(Suppl 7):S6 (15 October 2010) |
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Research article
The proteolytic system of lactic acid bacteria revisited: a genomic comparison Mengjin Liu, Jumamurat R Bayjanov, Bernadet Renckens, Arjen Nauta, Roland J Siezen BMC Genomics 2010, 11:36 (15 January 2010) |
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Methodology article
HaMStR: Profile hidden markov model based search for orthologs in ESTs Ingo Ebersberger, Sascha Strauss, Arndt von Haeseler BMC Evolutionary Biology 2009, 9:157 (8 July 2009) |
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Research
Heme and menaquinone induced electron transport in lactic acid bacteria Rob Brooijmans, Bart Smit, Filipe Santos, Jan van Riel, Willem M de Vos, Jeroen Hugenholtz Microbial Cell Factories 2009, 8:28 (29 May 2009) |
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Methodology article
Algorithm of OMA for large-scale orthology inference Alexander CJ Roth, Gaston H Gonnet, Christophe Dessimoz BMC Bioinformatics 2008, 9:518 (4 December 2008) |
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Review
Large-scale assignment of orthology: back to phylogenetics? Toni Gabaldón Genome Biology 2008, 9:235 (30 October 2008) Automated use of phylogenetic trees to deduce orthology relationships in proteins. |
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Research article
Christof Francke, Robert Kerkhoven, Michiel Wels, Roland J Siezen BMC Genomics 2008, 9:145 (27 March 2008) |
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Research article
Assessing the evolutionary rate of positional orthologous genes in prokaryotes using synteny data Frédéric Lemoine, Olivier Lespinet, Bernard Labedan BMC Evolutionary Biology 2007, 7:237 (29 November 2007) |