TAMEE: data management and analysis for tissue microarrays

Gerhard G Thallinger¹ , Kerstin Baumgartner¹ , Martin Pirklbauer¹ , Martina Uray³ , Elke Pauritsch³ , Gabor Mehes⁴ , Charles R Buck⁴^,5 , Kurt Zatloukal⁶ and Zlatko Trajanoski¹^,2

¹Institute for Genomics and Bioinformatics, Graz University of Technology, Petersgasse 14, 8010 Graz, Austria

²Christian Doppler Laboratory for Genomics and Bioinformatics, Petersgasse 14, 8010 Graz, Austria

³Department of Mathematics C, Graz University of Technology, Steyrergasse 30, 8010 Graz, Austria

⁴ORIDIS Biomed GmbH, Stiftingtalstrasse 3-5, 8010 Graz, Austria

⁵Bindley Bioscience Center, Purdue University, 475 Stadium Mall Drive, West Lafayette, IN 47907, USA

⁶Institute of Pathology, Medical University of Graz, Auenbruggerplatz 25, 8036 Graz, Austria

author email corresponding author email

BMC Bioinformatics 2007, 8:81doi:10.1186/1471-2105-8-81


Published:	7 March 2007

Additional files

Additional File 1:

Table with features of published TMA applications. PDF file containing a table showing the features of TMA applications described in literature.

Format: PDF Size: 86KB Download file

This file can be viewed with: Adobe Acrobat Reader

Additional File 2:

Sample core evaluation algorithm. Zip file containing Java source code of a sample core image evaluation algorithm and a description of the plug-in framework as the basis for the development of additional algorithms.

Format: ZIP Size: 3.8MB Download file

Additional File 3:

TAMEE UML model. Zip file containing the TAMEE UML model comprising the entity and the service diagrams.

Format: ZIP Size: 1.8MB Download file

Additional File 4:

TAMEE entity-relation diagram. Bitmap file containing the TAMEE entity relation diagram.

Format: BMP Size: 2.4MB Download file