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SpliceMiner: a high-throughput database implementation of the NCBI Evidence Viewer for microarray splice variant analysis

Ari B Kahn1,2* email, Michael C Ryan1,2,3* email, Hongfang Liu2,4 email, Barry R Zeeberg2 email, D Curtis Jamison1,5 email and John N Weinstein2 email

Department of Bioinformatics, George Mason University, Fairfax, Virginia, USA

Laboratory of Molecular Pharmacology, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, USA

Tiger Team Consulting, Fairfax, VA, USA

Georgetown University, Washington, DC, USA

School of Informatics, Northern Kentucky University, Highland Heights, KY, USA

author email corresponding author email* Contributed equally

BMC Bioinformatics 2007, 8:75doi:10.1186/1471-2105-8-75

Published: 5 March 2007

Additional files

Additional File 4:

Alternative splicing databases. This document provides a description of a large number of alternative splicing databases to provide context for the present study.

Format: DOC Size: 172KB Download file

This file can be viewed with: Microsoft Word Viewer

Additional File 1:

EVDB build process. This document provides a more detailed description of the process performed to construct EVDB.

Format: DOC Size: 1.2MB Download file

This file can be viewed with: Microsoft Word Viewer

Additional File 2:

SpliceMiner implementation. This document provides a system overview and software architecture description for SpliceMiner.

Format: DOC Size: 68KB Download file

This file can be viewed with: Microsoft Word Viewer

Additional File 3:

EVDB synopsis. This document provides an overview of the contents of EVDB.

Format: DOC Size: 193KB Download file

This file can be viewed with: Microsoft Word Viewer


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