Inference of miRNA targets using evolutionary conservation and pathway analysis
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* Corresponding author: Mihaela Zavolan mihaela.zavolan@unibas.ch
BMC Bioinformatics 2007, 8:69 doi:10.1186/1471-2105-8-69
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BioMed Central: 14 citations
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Database
miRdSNP: a database of disease-associated SNPs and microRNA target sites on 3'UTRs of human genes Andrew E Bruno, Li Li, James L Kalabus, Yuzhuo Pan, Aiming Yu, Zihua Hu BMC Genomics 2012, 13:44 (25 January 2012) |
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Research article
miREE: miRNA recognition elements ensemble Paula H Reyes-Herrera, Elisa Ficarra, Andrea Acquaviva, Enrico Macii BMC Bioinformatics 2011, 12:454 (24 November 2011) |
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Research article
Network analysis of microRNAs and their regulation in human ovarian cancer Sebastian Schmeier, Ulf Schaefer, Magbubah Essack, Vladimir B Bajic BMC Systems Biology 2011, 5:183 (3 November 2011) |
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Method
PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data David L Corcoran, Stoyan Georgiev, Neelanjan Mukherjee, Eva Gottwein, Rebecca L Skalsky, Jack D Keene, Uwe Ohler Genome Biology 2011, 12:R79 (18 August 2011) A method for identifying RNA binding sites and miRNA target motifs from PAR-CLIP data
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Software
miRTar: an integrated system for identifying miRNA-target interactions in human Justin Hsu, Chih-Min Chiu, Sheng-Da Hsu, Wei-Yun Huang, Chia-Hung Chien, Tzong-Yi Lee, Hsien-Da Huang BMC Bioinformatics 2011, 12:300 (26 July 2011) |
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Research article
Kahori Takane, Kosuke Fujishima, Yuka Watanabe, Asako Sato, Nobuto Saito, Masaru Tomita, Akio Kanai BMC Genomics 2010, 11:101 (9 February 2010) |
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Research
MTar: a computational microRNA target prediction architecture for human transcriptome Vinod Chandra, Reshmi Girijadevi, Achuthsankar S Nair, Sreenadhan S Pillai, Radhakrishna M Pillai BMC Bioinformatics 2010, 11(Suppl 1):S2 (18 January 2010) |
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Research article
Sebastian Schmeier, Cameron R MacPherson, Magbubah Essack, Mandeep Kaur, Ulf Schaefer, Harukazu Suzuki, Yoshihide Hayashizaki, Vladimir B Bajic BMC Genomics 2009, 10:595 (10 December 2009) This article is part of a collection on FANTOM4 |
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Research article
Accurate microRNA target prediction correlates with protein repression levels Manolis Maragkakis, Panagiotis Alexiou, Giorgio L Papadopoulos, Martin Reczko, Theodore Dalamagas, George Giannopoulos, George Goumas, Evangelos Koukis, Kornilios Kourtis, Victor A Simossis, Praveen Sethupathy, Thanasis Vergoulis, Nectarios Koziris, Timos Sellis, Panagiotis Tsanakas, Artemis G Hatzigeorgiou BMC Bioinformatics 2009, 10:295 (18 September 2009) |
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Software
Jessica Severin, Andrew M Waterhouse, Hideya Kawaji, Timo Lassmann, Erik van Nimwegen, Piotr J Balwierz, Michiel JL de Hoon, David A Hume, Piero Carninci, Yoshihide Hayashizaki, Harukazu Suzuki, Carsten O Daub, Alistair RR Forrest Genome Biology 2009, 10:R39 (19 April 2009) This article is part of a collection on FANTOM4 EdgeExpressDB is a novel database and set of interfaces for interpreting biological networks and comparing large high-throughput expression datasets. |
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Research article
Christian De Santis, Brad S Evans, Carolyn Smith-Keune, Dean R Jerry BMC Genomics 2008, 9:82 (19 February 2008) |
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Proceedings
Yuriy Gusev, Thomas D Schmittgen, Megan Lerner, Russell Postier, Daniel Brackett BMC Bioinformatics 2007, 8(Suppl 7):S16 (1 November 2007) |
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Correction
Correction: Inference of miRNA targets using evolutionary conservation and pathway analysis Dimos Gaidatzis, Erik van Nimwegen, Jean Hausser, Mihaela Zavolan BMC Bioinformatics 2007, 8:248 (12 July 2007) |
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Research article
Spatial preferences of microRNA targets in 3' untranslated regions William H Majoros, Uwe Ohler BMC Genomics 2007, 8:152 (7 June 2007) |