Blast sampling for structural and functional analyses

Anne Friedrich¹ , Raymond Ripp¹ , Nicolas Garnier² , Emmanuel Bettler² , Gilbert Deléage² , Olivier Poch¹ and Luc Moulinier¹

¹Laboratoire de Bioinformatique et Génomique Intégratives, Institut de Génétique et de Biologie Moléculaire et Cellulaire, Illkirch, France

²Institut de Biologie et Chimie des Protéines, Lyon, France

author email corresponding author email

BMC Bioinformatics 2007, 8:62doi:10.1186/1471-2105-8-62


Published:	23 February 2007

Additional files

Additional file 1:

Sequences selected in the case of the 1QJ4 protein. Sequences detected by BlastP searches () are represented by their E-values on the graph. Sequences selected by each sampling method are schematized by their projection on horizontal axes above the graph.

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Additional file 2:

Proportion of good quality MACS and mean norMD for the 284 protein dataset and restricted to the single domain proteins. These tables summarize the proportion of good quality MACS and mean norMD obtained: – for the 284 protein dataset. – for the 212 single PFAM domain proteins.

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Additional file 3:

G-mean results associated with detailed sensitivity and specificity when considering all proteins in subset+500

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Additional file 4:

List of the PDB identifier constituting the 284 protein dataset. In this list, the chain identifier corresponds to the last character, with "_" denoting no chain.

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