Breakdown of MUMmerGPU processing time. The stacked bar charts indicate the amount of time spent in each phase of the MUMmerGPU for the three test sets. Given a sufficiently large number of sequencing reads, the time spent building the suffix tree is small compared to time spent aligning queries.
Schatz et al. BMC Bioinformatics 2007 8:474 doi:10.1186/1471-2105-8-474