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High-throughput sequence alignment using Graphics Processing Units

Michael C Schatz*†, Cole Trapnell†, Arthur L Delcher and Amitabh Varshney

BMC Bioinformatics 2007, 8:474 doi:10.1186/1471-2105-8-474

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BarraCUDA - a fast short read sequence aligner using graphics processing units

Petr Klus, Simon Lam, Dag Lyberg, Ming Cheung, Graham Pullan, Ian McFarlane, Giles SH Yeo, Brian YH Lam BMC Research Notes 2012, 5:27 (13 January 2012)

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permGPU: Using graphics processing units in RNA microarray association studies

Ivo D Shterev, Sin-Ho Jung, Stephen L George, Kouros Owzar BMC Bioinformatics 2010, 11:329 (16 June 2010)

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Accelerating epistasis analysis in human genetics with consumer graphics hardware

Nicholas A Sinnott-Armstrong, Casey S Greene, Fabio Cancare, Jason H Moore BMC Research Notes 2009, 2:149 (24 July 2009)

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