Table 2

Positive and negative errors for indirect phylogeny inference with varying sample sizes

SNPs

Method

nH = 30

40

50

60

70

80

90

100

110

120


5

fastPHASE positive errors

10

12

15

14

11

15

25

15

10

10

5

fastPHASE negative errors

16

12

14

14

10

12

10

13

13

8

5

haplotyper positive errors

5

6

7

10

3

11

12

7

5

4

5

haplotyper negative errors

18

12

15

17

9

15

14

14

14

11


10

fastPHASE positive errors

38

32

43

34

31

41

46

53

41

38

10

fastPHASE negative errors

26

25

19

18

14

17

23

22

24

22

10

haplotyper positive errors

32

26

31

28

35

23

36

30

23

14

10

haplotyper negative errors

27

27

22

22

17

25

28

28

34

26


The table separates the phylogenetic errors from the experiments of Figure 3 into positive and negative errors for indirect phylogeny inference using fastPHASE and haplotyper.

Sridhar et al. BMC Bioinformatics 2007 8:472   doi:10.1186/1471-2105-8-472

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