Table 2 |
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|
Positive and negative errors for indirect phylogeny inference with varying sample sizes |
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|
SNPs |
Method |
nH = 30 |
40 |
50 |
60 |
70 |
80 |
90 |
100 |
110 |
120 |
|
|
|||||||||||
|
5 |
fastPHASE positive errors |
10 |
12 |
15 |
14 |
11 |
15 |
25 |
15 |
10 |
10 |
|
5 |
fastPHASE negative errors |
16 |
12 |
14 |
14 |
10 |
12 |
10 |
13 |
13 |
8 |
|
5 |
haplotyper positive errors |
5 |
6 |
7 |
10 |
3 |
11 |
12 |
7 |
5 |
4 |
|
5 |
haplotyper negative errors |
18 |
12 |
15 |
17 |
9 |
15 |
14 |
14 |
14 |
11 |
|
|
|||||||||||
|
10 |
fastPHASE positive errors |
38 |
32 |
43 |
34 |
31 |
41 |
46 |
53 |
41 |
38 |
|
10 |
fastPHASE negative errors |
26 |
25 |
19 |
18 |
14 |
17 |
23 |
22 |
24 |
22 |
|
10 |
haplotyper positive errors |
32 |
26 |
31 |
28 |
35 |
23 |
36 |
30 |
23 |
14 |
|
10 |
haplotyper negative errors |
27 |
27 |
22 |
22 |
17 |
25 |
28 |
28 |
34 |
26 |
|
|
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|
The table separates the phylogenetic errors from the experiments of Figure 3 into positive and negative errors for indirect phylogeny inference using fastPHASE and haplotyper. |
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|
Sridhar et al. BMC Bioinformatics 2007 8:472 doi:10.1186/1471-2105-8-472 |
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