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In situ analysis of cross-hybridisation on microarrays and the inference of expression correlation

Tineke Casneuf1,2,3, Yves Van de Peer1,2 and Wolfgang Huber3*

Author Affiliations

1 Department of Plant Systems Biology, VIB, B-9052 Ghent, Belgium

2 Department of Molecular Genetics, Ghent University, B-9052 Ghent, Belgium

3 EMBL – European Bioinformatics Institute, Cambridge CB10 1SD, UK

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BMC Bioinformatics 2007, 8:461 doi:10.1186/1471-2105-8-461

Published: 26 November 2007

Additional files

Additional file 1:

Off-target scores of Custom-made versus Affymetrix CDF. Barplot of the off-target sensitivity scores <a onClick="popup('http://www.biomedcentral.com/1471-2105/8/461/mathml/M2','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/8/461/mathml/M2">View MathML</a> of all probe set pairs in the Affymetrix (in pink) and the custom-made CDF (in light blue). This figure only shows pairs with an <a onClick="popup('http://www.biomedcentral.com/1471-2105/8/461/mathml/M2','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/8/461/mathml/M2">View MathML</a> ≥ 80.

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