WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences

doi:10.1186/1471-2105-8-46

BMC Bioinformatics

Volume 8

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Research article

WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences

Giulio Pavesi¹ , Federico Zambelli¹ and Graziano Pesole²^,3

¹Dipartimento di Scienze Biomolecolari e Biotecnologie, University of Milan, Milan, Italy

²Dipartimento di Biochimica e Biologia Molecolare "E. Quagliariello", University of Bari, Bari, Italy

³Istituto Tecnologie Biomediche – Consiglio Nazionale delle Ricerche, Bari, Italy

author email corresponding author email

BMC Bioinformatics 2007, 8:46doi:10.1186/1471-2105-8-46


Published:	7 February 2007

Additional files

Additional file 1:

Orthologous sequence sets. Orthologous sequence sets taken from the ABS database used for testing the algorithm.

Format: GZ Size: 36KB Download file

Additional file 2:

Motif solutions. Motifs annotated in the ABS database in the test sequences.

Format: TXT Size: 9KB Download file

Additional file 3:

Output of WeederH on orthologous sequence sets. Full output of WeederH on the orthologous sequence sets taken from the ABS database used for testing the algorithm.

Format: GZ Size: 145KB Download file

Additional file 4:

WeederH performance on ortholgous promoters. detailed results of WeederH applied to the ABS database data set, split in the different sequence sets and sites.

Format: XLS Size: 598KB Download file

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