Research article
WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences
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* Corresponding authors: Giulio Pavesi giulio.pavesi@unimi.it - Graziano Pesole graziano.pesole@biologia.uniba.it
1 Dipartimento di Scienze Biomolecolari e Biotecnologie, University of Milan, Milan, Italy
2 Dipartimento di Biochimica e Biologia Molecolare "E. Quagliariello", University of Bari, Bari, Italy
3 Istituto Tecnologie Biomediche – Consiglio Nazionale delle Ricerche, Bari, Italy
BMC Bioinformatics 2007, 8:46 doi:10.1186/1471-2105-8-46
Published: 7 February 2007Additional files
Additional file 1:
Orthologous sequence sets. Orthologous sequence sets taken from the ABS database used for testing the algorithm.
Format: GZ Size: 36KB Download file
Additional file 2:
Motif solutions. Motifs annotated in the ABS database in the test sequences.
Format: TXT Size: 9KB Download file
Additional file 3:
Output of WeederH on orthologous sequence sets. Full output of WeederH on the orthologous sequence sets taken from the ABS database used for testing the algorithm.
Format: GZ Size: 145KB Download file
Additional file 4:
WeederH performance on ortholgous promoters. detailed results of WeederH applied to the ABS database data set, split in the different sequence sets and sites.
Format: XLS Size: 598KB Download file
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