BMC Bioinformatics

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WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences

Giulio Pavesi*, Federico Zambelli and Graziano Pesole*

BMC Bioinformatics 2007, 8:46 doi:10.1186/1471-2105-8-46

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Methodology article   Open Access

A mutation degree model for the identification of transcriptional regulatory elements

Changqing Zhang, Jin Wang, Xu Hua, Jinggui Fang, Huaiqiu Zhu, Xiang Gao BMC Bioinformatics 2011, 12:262 (27 June 2011)

Methodology article   Open Access

MotifClick: prediction of cis-regulatory binding sites via merging cliques

Shaoqiang Zhang, Shan Li, Meng Niu, Phuc T Pham, Zhengchang Su BMC Bioinformatics 2011, 12:238 (16 June 2011)

Research article   Open Access Highly Accessed

Genome-scale study of the importance of binding site context for transcription factor binding and gene regulation

Jakub Westholm, Feifei Xu, Hans Ronne, Jan Komorowski BMC Bioinformatics 2008, 9:484 (17 November 2008)

Proceedings   Open Access

MTAP: The Motif Tool Assessment Platform

Daniel Quest, Kathryn Dempsey, Mohammad Shafiullah, Dhundy Bastola, Hesham Ali BMC Bioinformatics 2008, 9(Suppl 9):S6 (12 August 2008)

Research article   Open Access

Conserved upstream open reading frames in higher plants

Michael K Tran, Carolyn J Schultz, Ute Baumann BMC Genomics 2008, 9:361 (31 July 2008)