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Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors

Xueping Yu, Jimmy Lin, Donald J Zack and Jiang Qian*

BMC Bioinformatics 2007, 8:437 doi:10.1186/1471-2105-8-437

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Predicting tissue specific cis-regulatory modules in the human genome using pairs of co-occurring motifs

Hani Z Girgis, Ivan Ovcharenko BMC Bioinformatics 2012, 13:25 (7 February 2012)

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Motifs and cis-regulatory modules mediating the expression of genes co-expressed in presynaptic neurons

Rui Liu, Sridhar Hannenhalli, Maja Bucan Genome Biology 2009, 10:R72 (1 July 2009)

Abstract | Full text | PDF | PubMed |  Editor’s summary

An integrative strategy of comparative genomics, experimental and computational approaches reveals aspects of a regulatory network controlling neuronal-specific expression in presynaptic neurons.

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TiGER: A database for tissue-specific gene expression and regulation

Xiong Liu, Xueping Yu, Donald J Zack, Heng Zhu, Jiang Qian BMC Bioinformatics 2008, 9:271 (9 June 2008)

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Two different classes of co-occurring motif pairs found by a novel visualization method in human promoter regions

Katsuhiko Murakami, Tadashi Imanishi, Takashi Gojobori, Kenta Nakai BMC Genomics 2008, 9:112 (1 March 2008)

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