BMC Bioinformatics

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Extracting gene expression patterns and identifying co-expressed genes from microarray data reveals biologically responsive processes

Jeff W Chou, Tong Zhou, William K Kaufmann, Richard S Paules and Pierre R Bushel*

BMC Bioinformatics 2007, 8:427 doi:10.1186/1471-2105-8-427

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SFSSClass: an integrated approach for miRNA based tumor classification

Ramkrishna Mitra, Sanghamitra Bandyopadhyay, Ujjwal Maulik, Michael Q Zhang BMC Bioinformatics 2010, 11(Suppl 1):S22 (18 January 2010)

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Sources of variation in baseline gene expression levels from toxicogenomics study control animals across multiple laboratories

Michael J Boedigheimer, Russell D Wolfinger, Michael B Bass, Pierre R Bushel, Jeff W Chou, Matthew Cooper, J Christopher Corton, Jennifer Fostel, Susan Hester, Janice S Lee, Fenglong Liu, Jie Liu, Hui-Rong Qian, John Quackenbush, Syril Pettit, Karol L Thompson BMC Genomics 2008, 9:285 (12 June 2008)

An inter-laboratory meta-analysis of more than 500 microarrays from the liver and kidney of control rats defined key sources of variability in control animals and will aid in the efficient design of future toxicogenomics experiments.