Table 2

Quality control

Family

Reference

PPV

Sensitivity


AP2-EREBP

[39]

146/146 = 1.00

146/147 = 0.99

ARF

[40]

21/22 = 0.95

21/23 = 0.91

AUX/IAA

[40]

28/28 = 1.00

28/29 = 0.97

bHLH

[41]

122/132 = 0.92

122/154 = 0.80

bZIP

[42]

68/70 = 0.97

68/74 = 0.92

C2C2-Dof

[43]

35/36 = 0.97

35/36 = 0.97

C2C2-GATA

[44]

29/29 = 1.00

29/29 = 1.00

GRAS

[45]

32/33 = 0.97

32/33 = 0.97

MADS

[46]

99/104 = 0.95

99/108 = 0.92

MYB + MYB-related

[47]

184/209 = 0.88

184/198 = 0.93

NAC

[48]

100/101 = 0.99

100/100 = 1.00

WRKY

[49]

71/72 = 0.99

71/72 = 0.99


The Positive Predictive Value (PPV) and the Sensitivity were determined for arbitrarily selected A. thaliana TF families. For the PPV a deviation from 1.00 means the inclusion of false positives. For the Sensitivity deviations from 1.00 indicate exclusion of true members (false negatives). Families with both values larger than 0.90 appear in bold face.

Riaño-Pachón et al. BMC Bioinformatics 2007 8:42   doi:10.1186/1471-2105-8-42

Open Data