Pipeline for the identification and classification of TFs. The pipeline starts with the complete collection of predicted proteins for a given species. Then an HMM search is conducted over this collection keeping all significant hits and discarding all proteins containing a transposase-related domain. Finally the Classifier produces a list of putative TFs grouped into families.
Riaño-Pachón et al. BMC Bioinformatics 2007 8:42 doi:10.1186/1471-2105-8-42