Research article  

Functional annotation of the transcriptome of Sorghum bicolor in response to osmotic stress and abscisic acid

Diana V Dugas, Marcela K Monaco, Andrew Olson, Robert R Klein, Sunita Kumari, Doreen Ware, Patricia E Klein BMC Genomics 2011, 12:514 (18 October 2011)

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Research article  

Comprehensive Analysis of NAC Domain Transcription Factor Gene Family in Populus trichocarpa

Ruibo Hu, Guang Qi, Yingzhen Kong, Dejing Kong, Qian Gao, Gongke Zhou BMC Plant Biology 2010, 10:145 (15 July 2010)

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Research article  

Orchestrated transcription of biological processes in the marine picoeukaryote Ostreococcus exposed to light/dark cycles

Annabelle Monnier, Silvia Liverani, Régis Bouvet, Béline Jesson, Jim Q Smith, Jean Mosser, Florence Corellou, François-Yves Bouget BMC Genomics 2010, 11:192 (22 March 2010)

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Database  

SoyDB: a knowledge database of soybean transcription factors

Zheng Wang, Marc Libault, Trupti Joshi, Babu Valliyodan, Henry T Nguyen, Dong Xu, Gary Stacey, Jianlin Cheng BMC Plant Biology 2010, 10:14 (18 January 2010)

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Protein family review  

The WUS homeobox-containing (WOX) protein family

Eric van der Graaff, Thomas Laux, Stefan A Rensing Genome Biology 2009, 10:248 (29 December 2009)

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Software  

ChlamyCyc: an integrative systems biology database and web-portal for Chlamydomonas reinhardtii

Patrick May, Jan-Ole Christian, Stefan Kempa, Dirk Walther BMC Genomics 2009, 10:209 (4 May 2009)

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Research article  

A cross-species transcriptomics approach to identify genes involved in leaf development

Nathaniel Street, Andreas Sjödin, Max Bylesjö, Petter Gustafsson, Johan Trygg, Stefan Jansson BMC Genomics 2008, 9:589 (5 December 2008)

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Database  

PlantPAN: Plant promoter analysis navigator, for identifying combinatorial cis-regulatory elements with distance constraint in plant gene groups

Wen-Chi Chang, Tzong-Yi Lee, Hsien-Da Huang, His-Yuan Huang, Rong-Long Pan BMC Genomics 2008, 9:561 (26 November 2008)

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Database  

DATFAP: A Database of Primers and Homology Alignments for Transcription Factors from 13 Plant Species

Jakob Fredslund BMC Genomics 2008, 9:140 (25 March 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | 1 comment

Research article  

Transcriptome analysis of grain development in hexaploid wheat

Yongfang Wan, Rebecca L Poole, Alison K Huttly, Claudia Toscano-Underwood, Kevin Feeney, Sue Welham, Mike J Gooding, Clare Mills, Keith J Edwards, Peter R Shewry, Rowan AC Mitchell BMC Genomics 2008, 9:121 (6 March 2008)

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Database  

TOBFAC: the database of tobacco transcription factors

Paul J Rushton, Marta T Bokowiec, Thomas W Laudeman, Jennifer F Brannock, Xianfeng Chen, Michael P Timko BMC Bioinformatics 2008, 9:53 (25 January 2008)

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Research article  

Genome-wide analysis of ABA-responsive elements ABRE and CE3 reveals divergent patterns in Arabidopsis and rice

Judith L Gómez-Porras, Diego Riaño-Pachón, Ingo Dreyer, Jorge E Mayer, Bernd Mueller-Roeber BMC Genomics 2007, 8:260 (1 August 2007)

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Methodology  

A quantitative RT-PCR platform for high-throughput expression profiling of 2500 rice transcription factors

Camila Caldana, Wolf-Rüdiger Scheible, Bernd Mueller-Roeber, Slobodan Ruzicic Plant Methods 2007, 3:7 (8 June 2007)

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