Bioinformatic identification of novel putative photoreceptor specific cis-elements

doi:10.1186/1471-2105-8-407

BMC Bioinformatics
Volume 8

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Danko CG
McIlvain VA
Qin M
Knox BE
Pertsov AM

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Qin M
Knox BE
Pertsov AM
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Research article

Bioinformatic identification of novel putative photoreceptor specific cis-elements

Charles G Danko¹ , Vera A McIlvain² , Maochun Qin¹ , Barry E Knox² and Arkady M Pertsov¹

¹Department of Pharmacology, SUNY Upstate Medical University, Syracuse, NY, USA

²Department of Biochemistry & Molecular Biology and Ophthalmology, SUNY Upstate Medical University, Syracuse, NY, USA

author email corresponding author email

BMC Bioinformatics 2007, 8:407doi:10.1186/1471-2105-8-407


Published:	22 October 2007

Additional files

Additional file 1:

Explanation of Supplementary Data. Detailed information on reading HTML formatted supplementary data.

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Additional file 2:

Extended table of information on predictions. Contains cross-promoter alignments and phylogenetic alignments for each prediction, as well as the entire list of ENSEMBL IDs for genes used in the study. Please refer to "Data Supplement Instructions.doc" for detailed information.

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This file can be viewed with: Microsoft Word Viewer

Additional file 3:

Additional figure 1. Region surrounding predicted IL-6 sites in 5 rod promoters. Sequences identified by IAMMS are shaded in gray; copies of the core (including the degenerate copy CTGGA) are outlined in black.

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Additional file 4:

Additional figure 2. The location of predicted RXR core binding sites (gray) and the adjacent degenerate core region (outline) in 4 cone promoters.

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