Table 1 |
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Data available in UniParc |
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Source Name |
Source Description |
Number of Releases |
Number of Entries |
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|
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|
EMBL |
EMBL Nucleotide Sequence Database |
883 |
4,776,027 |
|
EMBLWGS |
Whole Genome Shotgun |
256 |
2,894,683 |
|
EMBL_ANNCON |
Annotated CON entries |
63 |
6,773,092 |
|
EMBL_TPA |
Third Party Annotation |
74 |
5,497 |
|
ENSEMBL_ARMADILLO |
Ensembl Dasypus novemcinctus |
8 |
15,552 |
|
ENSEMBL_BUSHBABY |
Ensembl Otolemur garnettii |
3 |
15,449 |
|
ENSEMBL_CAT |
Ensembl Felis catus |
4 |
14,846 |
|
ENSEMBL_CBRIGGSAE |
Ensembl Caenorhabditis briggsae |
14 |
14,713 |
|
ENSEMBL_CELEGANS |
Ensembl Caenorhabditis elegans |
35 |
39,090 |
|
ENSEMBL_CHICKEN |
Ensembl Gallus gallus |
29 |
67,610 |
|
ENSEMBL_CHIMP |
Ensembl Pan troglodytes |
30 |
83,636 |
|
ENSEMBL_CIONA |
Ensembl Ciona intestinalis |
18 |
40,996 |
|
ENSEMBL_COMMON_SHREW |
Ensembl Sorex araneus |
2 |
13,195 |
|
ENSEMBL_COW |
Ensembl Bos taurus |
17 |
82,819 |
|
ENSEMBL_DOG |
Ensembl Canis familiaris |
22 |
52,106 |
|
ENSEMBL_ELEPHANT |
Ensembl Loxodonta africana |
8 |
15,717 |
|
ENSEMBL_ERINACEUS |
Ensembl Erinaceus europaeus |
4 |
14,593 |
|
ENSEMBL_FLY |
Ensembl Drosophila melanogaster |
35 |
25,934 |
|
ENSEMBL_FUGU |
Ensembl Fugu rubripes |
36 |
112,525 |
|
ENSEMBL_GUINEA_PIG |
Ensembl Cavia porcellus |
4 |
28,438 |
|
ENSEMBL_HEDGEHOG |
Ensembl Echinops telfairi |
8 |
16,582 |
|
ENSEMBL_HONEYBEE |
Ensembl Apis mellifera |
18 |
43,953 |
|
ENSEMBL_HUMAN |
Ensembl Homo sapiens |
35 |
115,689 |
|
ENSEMBL_MEDAKA |
Ensembl Oryzias latipes |
6 |
25,880 |
|
ENSEMBL_MICROBAT |
Ensembl Myotis lucifugus |
3 |
16,234 |
|
ENSEMBL_MOSQUITO |
Ensembl Anopheles gambiae |
35 |
55,270 |
|
ENSEMBL_MOUSE |
Ensembl Mus musculus |
37 |
127,637 |
|
ENSEMBL_OPOSSUM |
Ensembl Monodelphis domestica |
13 |
54,269 |
|
ENSEMBL_PLATYPUS |
Ensembl Ornithorhynchus anatinus |
5 |
32,001 |
|
ENSEMBL_RABBIT |
Ensembl Oryctolagus cuniculus |
8 |
15,441 |
|
ENSEMBL_RAT |
Ensembl Rattus norvegicus |
35 |
89,524 |
|
ENSEMBL_RHESUS_MACAQUE |
Ensembl Macaca mulatta |
11 |
61,299 |
|
ENSEMBL_SQUIRREL |
Ensembl Spermophilus tridecemlineatus |
3 |
14,833 |
|
ENSEMBL_STICKLEBACK |
Ensembl Gasterosteus aculeatus |
8 |
27,671 |
|
ENSEMBL_TETRAODON |
Ensembl Tetraodon nigroviridis |
27 |
28,004 |
|
ENSEMBL_TREE_SHREW |
Ensembl Tupaia belangeri |
4 |
15,462 |
|
ENSEMBL_XENOPUS |
Ensembl Xenopus tropicalis |
21 |
76,758 |
|
ENSEMBL_YF_MOSQUITO |
Ensembl Aedes aegypti |
8 |
16,789 |
|
ENSEMBL_ZEBRAFISH |
Ensembl Danio rerio |
37 |
161,469 |
|
EPO |
European Patent Office |
11 |
780,113 |
|
FLYBASE |
FlyBase |
3 |
18,549 |
|
H_INV |
H-Invitational Database |
25 |
864,262 |
|
IPI |
International Protein Index |
58 |
910,640 |
|
JPO |
Japan Patent Office |
15 |
404,695 |
|
PDB |
Protein Data Bank |
261 |
112,882 |
|
PIR |
PIR-PSD |
17 |
283,420 |
|
PIRARC |
PIR-PSD archive |
2 |
342,752 |
|
PRF |
Protein Research Foundation |
77 |
791,254 |
|
REFSEQ |
RefSeq release + updates |
847 |
5,598,926 |
|
REFSEQ_HUMAN |
REFSEQ Homo sapiens |
154 |
105,699 |
|
REFSEQ_MOUSE |
REFSEQ Mus musculus |
153 |
152,647 |
|
REFSEQ_RAT |
REFSEQ Rattus norvegicus |
151 |
97,753 |
|
REFSEQ_ZEBRAFISH |
REFSEQ Danio rerio |
141 |
63,183 |
|
SGD |
SGD Protein |
16 |
6,002 |
|
SWISSPROT |
UniProtKB/Swiss-Prot |
213 |
333,918 |
|
SWISSPROT_VARSPLIC |
SWISS-PROT alternative splicing |
132 |
38,756 |
|
TAIR_ARABIDOPSIS |
TAIR Arabidopsis thaliana |
5 |
33,914 |
|
TREMBL |
UniProtKB/TrEMBL |
118 |
5,877,814 |
|
TREMBL_VARSPLIC |
TrEMBL alternative splicing |
78 |
1,051 |
|
TROME_CE |
TROME Caenorhabditis elegans |
18 |
84,895 |
|
TROME_DM |
TROME Drosophila melanogaster |
20 |
116,588 |
|
TROME_HS |
TROME Homo sapiens |
25 |
1,180,511 |
|
TROME_MM |
TROME Mus musculus |
24 |
675,662 |
|
UNIMES |
UniProt Metagenomic and Environmental Sequences |
1 |
6,028,191 |
|
USPTO |
US Patent and Trademark Office |
14 |
724,428 |
|
VEGA_DOG |
Vega Canis familiaris |
1 |
50 |
|
VEGA_HUMAN |
Vega Homo sapiens |
7 |
58,931 |
|
VEGA_MOUSE |
Vega Mus musculus |
7 |
20,750 |
|
VEGA_ZEBRAFISH |
Vega Danio rerio |
8 |
13,293 |
|
WORMBASE |
WormBase |
65 |
30,438 |
|
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Data sources warehoused in UniParc. The source name should be used when using the REST and SOAP interfaces. The number of releases indicates how many times the source files have been parsed and loaded into UniParc and includes incremental and full releases. The number of entries corresponds to the total number of protein entries parsed for all the releases. Note that UniParc is based on 100% sequence identity so one protein entry might be repeated multiple times as versions are updated. Replaced entries are simply marked as inactive, but are never deleted in order to provide archival coverage. |
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Côté et al. BMC Bioinformatics 2007 8:401 doi:10.1186/1471-2105-8-401 |
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