Table 2 |
|||
|
fREDUCEpredictions for regulators with poorly characterized specificities |
|||
|
Regulator |
Predicted Site |
P-value |
Motif from Literature Search |
|
|
|||
|
ARG80 |
TTYTCY |
34.3 |
CYNYYAANKRMAR |
|
ARO80 |
TRCCGM |
5.6 |
TWRCCG |
|
ASK10 |
AYTTKA |
9.1 |
|
|
CST6 |
TYAAWA |
7.0 |
|
|
DAT1 |
WTTSAA |
16.7 |
|
|
ECM22 |
GCRSCC |
16.2 |
TCGTATA |
|
EDS1 |
TWTTSA |
8.4 |
|
|
FAP7 |
WTRAAG |
11.3 |
|
|
GAT3 |
CCTSGGC |
15.2 |
|
|
GCR2 |
TTCAWW |
5.0 |
CTTCC |
|
HAL9 |
WTTRAA |
14.7 |
|
|
HIR3 |
WTTRAA |
22.0 |
ACGCTAAA |
|
IME4 |
YACACAC |
17.8 |
|
|
MAL13 |
CCASSG |
11.6 |
|
|
MAL33 |
GCRCAS |
13.8 |
|
|
MET18 |
WTTCAA |
8.2 |
|
|
MGA1 |
TTTRAY |
5.9 |
|
|
MSN1 |
MMCCCA |
3.8 |
|
|
MTH1 |
GGAGRA |
3.4 |
CGGANNA * |
|
OAF1 |
CGCASY |
4.9 |
CGGNNNTNAN9–12CCG |
|
RGM1 |
CSGSCC |
27.1 |
|
|
RTG1 |
ATYTRA |
10.3 |
|
|
SIP3 |
WTCAAW |
7.6 |
|
|
SMK1 |
WTGWAG |
3.9 |
|
|
STB2 |
CAAGGYC |
3.1 |
|
|
STB6 |
TATSAW |
5.6 |
|
|
STP4 |
AARMTT |
24.1 |
|
|
TOS8 |
RCACMC |
20.7 |
|
|
UPC2 |
MATSAA |
4.5 |
|
|
WAR1 |
TYAAGW |
6.6 |
|
|
YBR239c |
WATAYT |
16.8 |
|
|
YDR049W |
AWTGAW |
3.5 |
|
|
YER051w |
AKYACT |
3.9 |
|
|
YER130C |
CAARTW |
3.1 |
|
|
YFL052w |
WTCAAK |
3.6 |
|
|
YGR067C |
TTYAAW |
4.6 |
|
|
YKR064W |
WGTTRA |
6.3 |
|
|
YLR278C |
KTTMAA |
7.2 |
|
|
YML081W |
WCAAMT |
3.7 |
|
|
YNR063W |
TCAARTA |
2.4 |
|
|
YPR196W |
WTCAAW |
10.3 |
|
|
|
|||
|
We searched the literature for evidence supporting our motif predictions and the matching examples are highlighted. *The annotated motifs for Rgt1p. |
|||
|
Wu et al. BMC Bioinformatics 2007 8:399 doi:10.1186/1471-2105-8-399 |
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