|
Known circular permutation results |
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| Protein 1 |
Protein 2 |
Us |
DaliLite |
K2 |
||||
|
|
||||||||
| PDB(Length) |
PDB(Length) |
N |
RMSD |
p – value |
N |
RMSD |
N |
RMSD |
|
|
||||||||
| 1rinA(180) |
2cna_(237) |
152* |
0.875 |
10-6 |
106 |
1.7 |
60 |
0.92 |
| 1glh_(214) |
1cpn_(208) |
192* |
1.163 |
10-5 |
156 |
0.4 |
156 |
0.41 |
| 1exg_(110) |
1tul_(102) |
74* |
1.485 |
10-4 |
63 |
4.0 |
34 |
2.26 |
| 1rhgA(145) |
1bcfA(158) |
118* |
1.500 |
10-4 |
94 |
2.3 |
81 |
1.51 |
| 1ihwA(52) |
1sso_(62) |
46* |
0.502 |
10-3 |
45 |
2.9 |
28 |
1.93 |
|
Comparison of results against DaliLite and K2. DaliLite is not expected to find sequence order independent alignments. K2 did not find the circular permutation even when the sequence order independent options was selected. | ||||||||
Dundas et al. BMC Bioinformatics 2007 8:388 doi:10.1186/1471-2105-8-388 |
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