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External Metabolites Abbreviation |
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| Exchange Metabolite Abbreviation |
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| 12dgr_m |
1,2-Diacylglycerol |
hx |
Hypoxanthine |
| 23dpg |
2,3-Phospho-D-glyceroyl phosphate |
hxan |
Hypoxanthine |
| 2dmmq8 |
2-Demethylmenaquinone 8 |
ile-L |
L-Isoleucine |
| 2dmmql8 |
2-Demethylmenaquinol 8 |
ino |
Inosine |
| 3pg |
3-Phospho-D-glycerate |
lac |
Lactate |
| ac |
Acetate |
lac-L |
L-Lactate |
| acac |
Acetoacetate |
leu-L |
L-Leucine |
| acald |
Acetaldehyde |
lys-L |
L-Lysine |
| ad |
Acetamide |
mal |
Malate |
| ade |
Adenine |
mal-L |
L-Malate |
| ado |
Adenosine |
meoh |
Methanol |
| adp |
ADP |
mql8 |
Menaquinol 8 |
| akg |
2-Oxoglutarate |
mqn8 |
Menaquinone 8 |
| ala-L |
L-Alanine |
nad |
Nicotinamide adenine dinucleotide |
| ala-S |
S-Alanine |
nadh |
Nicotinamide adenine dinucleotide – reduced |
| amp |
AMP |
nadp |
Nicotinamide adenine dinucleotide phosphate |
| arachd |
Arachidonic Acid (C20:4) |
nadph |
Nicotinamide adenine dinucleotide phosphate – reduced |
| asp-L |
L-Asparagine |
nh3 |
Ammonium |
| atp |
ATP |
nh4 |
Ammonium Ion |
| bhb |
(2)-3-Hydroxybuanoate |
o2 |
O2 |
| ch4 |
Methan |
oaa |
Oxaloacetate |
| co2 |
CO2 |
ocdc All |
octadecanoate, octadecenoate, octadecynoate |
| coa |
Coenzyme A |
ocdca |
octadecanoate |
| crvnc |
Cervonic Acid (C22:6, n-3) |
ocdcea |
octadecenoate |
| cys-L |
L-Cysteine |
ocdcya |
octadecynoate |
| e4p |
D-Erythrose 4-phosphate |
orn |
Ornithine |
| etoh |
Ethanol |
pep |
Phosphoenolpyruvate |
| fad |
Flavin adenine dinucleotide |
phe-L |
L-Phenylalanine |
| fadh2 |
Flavin adenine dinucleotide (reduced form) |
pheme |
Protoheme |
| fe2 |
Iron (II) |
phs-L |
Phospholipid |
| fe3 |
Iron (III) |
pi |
Phosphate |
| for |
Formate |
ppi |
Diphosphate |
| fum |
Fumarate |
pro-L |
L-Proline |
| glc |
Glucose |
ps_m |
Phosphatidylserine |
| glc-D |
D-Glucose |
pyr |
Pyruvate |
| glu-L |
L-Glutamate |
q8 |
Ubiquinone-8 |
| gly |
Glycine |
q8h2 |
Ubiquinol-8 |
| glyc |
Glycerol |
r5p |
alpha-D-Ribose 5-phosphate |
| glyc3p |
Glycerol 3-phosphate |
ser-L |
L-Serine |
| gsn |
Guanosine |
so4 |
Sulfate |
| gua |
Guanine |
succ |
Succinate |
| h |
H+ |
thr-L |
L-Threonine |
| h2 |
H2 |
trp-L |
L-Tryptophan |
| h2co3 |
carbonic acid |
tyr-L |
L-Tyrosine |
| h2o |
H2O |
urea |
Urea |
| hdca |
Hexadecanoate (n-C16:0) |
val-L |
L-Valine |
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Abbreviations of all external metabolite found in the 68 models used in this study. | |||
Yeung et al. BMC Bioinformatics 2007 8:363 doi:10.1186/1471-2105-8-363 |
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