Table 4

Predictive performance of different prediction methods for the evaluation data sets.

EV153_low


Localization

HYBRID

CELLO II

PSORTb v.2.0

PSLpred

P-CLASSIFIER






Acc (%)

MCC

Acc (%)

MCC

Acc (%)

MCC

Acc (%)

MCC

Acc (%)

MCC


CP

    91.7

0.67

    91.7

    0.70

63.5

-0.61

89.6

0.59

    91.7

0.66

IM

    65.4

    0.73

46.2

0.64

46.2

-0.58

38.5

0.41

30.8

0.48

PP

45.5

0.25

    81.8

    0.49

00.0

-0.03

54.5

0.34

    81.8

    0.49

OM

    44.4

    0.58

33.3

0.34

22.2

-0.46

    44.4

    0.58

22.2

0.17

EC

27.3

0.43

    45.5

0.50

09.1

-0.29

    45.5

    0.54

27.3

0.33


Overall

    76.5

-

    76.5

-

49.7

-

72.5

-

71.9

-


EV90_high


Localization

HYBRID

CELLO II

PSORTb v.2.0

PSLpred

P-CLASSIFIER






Acc (%)

MCC

Acc (%)

MCC

Acc (%)

MCC

Acc (%)

MCC

Acc (%)

MCC


CP

    100.0

0.95

92.9

0.83

    100.0

    1.00

096.4

0.88

92.9

0.78

IM

96.2

0.97

73.1

0.75

    100.0

    1.00

92.3

0.92

80.8

0.84

PP

    100.0

0.96

61.5

0.58

    100.0

    1.00

92.3

0.83

46.2

0.46

OM

    94.7

    0.97

73.7

0.67

    94.7

    0.97

68.4

0.79

73.7

0.69

EC

75.0

0.86

75.0

0.54

    100.0

    1.00

    100.0

0.81

75.0

0.54


Overall

96.7

-

77.8

-

    98.9

-

88.9

-

77.8

-


EV243_all


Localization

HYBRID

CELLO II

PSORTb v.2.0

PSLpred

P-CLASSIFIER






Acc (%)

MCC

Acc (%)

MCC

Acc (%)

MCC

Acc (%)

MCC

Acc (%)

MCC


CP

    93.5

    0.80

91.9

0.77

71.8

0.73

91.1

0.72

91.9

0.73

IM

    80.8

    0.85

59.6

0.70

73.1

0.80

65.4

0.68

55.8

0.67

PP

    75.0

0.56

70.8

0.51

54.2

    0.66

    75.0

0.57

62.5

0.45

OM

    78.6

    0.85

60.7

0.58

71.4

0.83

60.7

0.73

57.1

0.53

EC

40.0

0.57

53.3

0.50

33.3

0.57

    60.0

    0.62

40.0

0.39


Overall

    84.0

-

77.0

-

67.9

-

78.6

-

74.1

-


ยง The best performance of overall and individual localization sites is underlined. HYBRID is trained on the PS1444 data set.

Su et al. BMC Bioinformatics 2007 8:330   doi:10.1186/1471-2105-8-330

Open Data