  Methodology articleProtein structural similarity search by Ramachandran codesWei-Cheng Lo Institute of Bioinformatics and Structural Biology, National Tsing Hua University, 101, Section 2 Kuang Fu Road, Hsinchu 30013, Taiwan
BMC Bioinformatics 2007, 8:307doi:10.1186/1471-2105-8-307
Additional filesAdditional file 1: The training set. A list of the SCOP domains in the training set. Format: XLS Size: 95KB Download file This file can be viewed with: Microsoft Excel Viewer Additional file 2: Performances of SARST scoring matrices. The F-measure and running time for SARST using different scoring matrices. Format: XLS Size: 16KB Download file This file can be viewed with: Microsoft Excel Viewer Additional file 3: The query and target proteins. A list of the 83 query proteins and the large target database containing 24,337 proteins collected from the ASTRAL SCOP 1.69 100% identity subset. Format: XLS Size: 3.1MB Download file This file can be viewed with: Microsoft Excel Viewer Additional file 4: Effects of gap penalties. The average recall, precision, F-measure and running time for SARST under various gap penalties. Format: XLS Size: 14KB Download file This file can be viewed with: Microsoft Excel Viewer Additional file 5: Query proteins with incomplete structures. A subset of Aung and Tan's query proteins [30] that contain missing residues and/or incomplete backbone structures. The extent of structural incompleteness is provided, too. Format: XLS Size: 16KB Download file This file can be viewed with: Microsoft Excel Viewer |
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