|
PA flagged probesets with > 8 fold differential expression according to MAS5 and less than 2 fold according to RMA. |
|||||
| Probeset ID |
f.c. |
ttest |
mcf7 |
mcf10a |
gene name |
|
|
|||||
| 1553494_at |
5.03 ± 0.59 |
0.00 |
4.05 |
-0.97 |
TDH |
| 210833_at |
4.69 ± 0.53 |
0.00 |
4.37 |
-0.32 |
PTGER3 |
| 1564699_at |
4.56 ± 0.67 |
0.01 |
4.10 |
-0.46 |
C5orf4 |
| 222136_x_at |
4.04 ± 0.54 |
0.00 |
7.62 |
3.58 |
ZNF43 |
| 1558687_a_at |
3.86 ± 0.67 |
0.00 |
4.23 |
0.38 |
NA |
| 228811_at |
3.84 ± 0.56 |
0.00 |
4.33 |
0.48 |
PLA2G5 |
| 214761_at |
3.59 ± 0.56 |
0.00 |
4.63 |
1.04 |
ZNF423 |
| 207886_s_at |
3.58 ± 0.25 |
0.02 |
4.74 |
1.17 |
CALCR |
| 217681_at |
3.40 ± 1.28 |
0.00 |
5.66 |
2.26 |
WNT7B |
| 210100_s_at |
3.38 ± 0.98 |
0.00 |
6.48 |
3.11 |
ABCA2 |
| 205501_at |
3.34 ± 1.23 |
0.04 |
3.58 |
0.25 |
NA |
| 243580_at |
3.29 ± 0.75 |
0.01 |
4.61 |
1.32 |
GNA14 |
| 214191_at |
3.26 ± 0.68 |
0.00 |
5.07 |
1.81 |
ICA1 |
| 243650_at |
3.20 ± 1.51 |
0.03 |
4.96 |
1.76 |
PLEKHH2 |
| 231795_at |
3.19 ± 1.08 |
0.00 |
4.48 |
1.29 |
NA |
| 230917_at |
3.16 ± 1.19 |
0.03 |
4.34 |
1.18 |
NA |
| 228090_at |
3.13 ± 0.52 |
0.01 |
5.86 |
2.73 |
NMNAT3 |
| 216061_x_at |
3.13 ± 0.63 |
0.00 |
6.35 |
3.22 |
PDGFB |
| 243804_at |
3.12 ± 0.57 |
0.01 |
4.12 |
1.00 |
FLJ32642 |
| 204778_x_at |
3.09 ± 1.25 |
0.01 |
6.09 |
3.00 |
HOXB7 |
| 241744_x_at |
3.08 ± 0.52 |
0.04 |
3.63 |
0.54 |
NA |
| 226086_at |
3.05 ± 0.49 |
0.00 |
4.18 |
1.13 |
SYT13 |
| 1569701_at |
3.03 ± 0.47 |
0.04 |
3.91 |
0.89 |
PER3 |
| 225163_at |
3.01 ± 0.72 |
0.01 |
5.05 |
2.03 |
FRMD4A |
| 204885_s_at |
-3.22 ± 0.40 |
0.01 |
2.70 |
5.92 |
MSLN |
| 214587_at |
-3.27 ± 0.28 |
0.03 |
0.64 |
3.92 |
COL8A1 |
| 233792_at |
-3.31 ± 0.61 |
0.00 |
0.51 |
3.82 |
NA |
| 205964_at |
-3.44 ± 0.45 |
0.02 |
1.22 |
4.66 |
ZNF426 |
| 219983_at |
-3.47 ± 0.27 |
0.00 |
0.73 |
4.20 |
HRASLS |
| 239955_at |
-3.47 ± 0.84 |
0.00 |
0.48 |
3.95 |
NA |
| 1563693_at |
-3.50 ± 0.30 |
0.00 |
0.13 |
3.63 |
NA |
| 1553574_at |
-3.59 ± 1.10 |
0.00 |
-0.20 |
3.39 |
IFNE1 |
| 219058_x_at |
-3.70 ± 1.22 |
0.01 |
2.46 |
6.16 |
LCN7 |
| 228821_at |
-3.75 ± 0.43 |
0.01 |
-0.17 |
3.58 |
ST6GAL2 |
| 1564796_at |
-3.87 ± 0.28 |
0.01 |
0.80 |
4.68 |
EMP1 |
| 225372_at |
-4.07 ± 0.39 |
0.00 |
0.74 |
4.82 |
C10orf54 |
| 1556773_at |
-4.14 ± 1.39 |
0.00 |
0.10 |
4.24 |
PTHLH |
| 1562648_at |
-4.17 ± 0.84 |
0.00 |
0.10 |
4.28 |
KIAA1212 |
| 1558512_at |
-4.29 ± 1.38 |
0.00 |
-0.32 |
3.97 |
NA |
| 1553654_at |
-4.45 ± 0.70 |
0.00 |
-0.97 |
3.48 |
SYT14 |
|
f.c.: log2 fold change, ± standard error. t-test: t-test p-score between replicates. MCF7, MCF10a: log2 mean expression level. Probesets marked in bold type were validated by real time PCR. | |||||
Pepper et al. BMC Bioinformatics 2007 8:273 doi:10.1186/1471-2105-8-273 |
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