Research article  

Which clustering algorithm is better for predicting protein complexes?

Charalampos N Moschopoulos, Georgios A Pavlopoulos, Ernesto Iacucci, Jan Aerts, Spiridon Likothanassis, Reinhard Schneider, Sophia Kossida BMC Research Notes 2011, 4:549 (20 December 2011)

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Research article  

Noise reduction in protein-protein interaction graphs by the implementation of a novel weighting scheme

George D Kritikos, Charalampos Moschopoulos, Michalis Vazirgiannis, Sophia Kossida BMC Bioinformatics 2011, 12:239 (16 June 2011)

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Research  

Recent advances in clustering methods for protein interaction networks

Jianxin Wang, Min Li, Youping Deng, Yi Pan BMC Genomics 2010, 11(Suppl 3):S10 (1 December 2010)

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Research  

Identifying protein complexes from interaction networks based on clique percolation and distance restriction

Jianxin Wang, Binbin Liu, Min Li, Yi Pan BMC Genomics 2010, 11(Suppl 2):S10 (2 November 2010)

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Proceedings  

Determining modular organization of protein interaction networks by maximizing modularity density

Shihua Zhang, Xue-Mei Ning, Chris Ding, Xiang-Sun Zhang BMC Systems Biology 2010, 4(Suppl 2):S10 (13 September 2010)

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Proceedings  

Identification of functional hubs and modules by converting interactome networks into hierarchical ordering of proteins

Young-Rae Cho, Aidong Zhang BMC Bioinformatics 2010, 11(Suppl 3):S3 (29 April 2010)

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Research  

Computational approaches for detecting protein complexes from protein interaction networks: a survey

Xiaoli Li, Min Wu, Chee-Keong Kwoh, See-Kiong Ng BMC Genomics 2010, 11(Suppl 1):S3 (10 February 2010)

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Research article  

An in silico method for detecting overlapping functional modules from composite biological networks

Ioannis A Maraziotis, Konstantina Dimitrakopoulou, Anastasios Bezerianos BMC Systems Biology 2008, 2:93 (1 November 2008)

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Oral presentation  

Functional module detection by functional flow pattern mining in protein interaction networks

Young-Rae Cho, Lei Shi, Aidong Zhang BMC Bioinformatics 2008, 9(Suppl 10):O1 (30 October 2008)

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