BMC Bioinformatics

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Nearest Neighbor Networks: clustering expression data based on gene neighborhoods

Curtis Huttenhower, Avi I Flamholz, Jessica N Landis, Sauhard Sahi, Chad L Myers, Kellen L Olszewski, Matthew A Hibbs, Nathan O Siemers, Olga G Troyanskaya and Hilary A Coller*

BMC Bioinformatics 2007, 8:250 doi:10.1186/1471-2105-8-250

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Research article   Open Access

Comparative analysis of missing value imputation methods to improve clustering and interpretation of microarray experiments

Magalie Celton, Alain Malpertuy, Gaëlle Lelandais, Alexandre G de Brevern BMC Genomics 2010, 11:15 (7 January 2010)

Research   Open Access Highly Accessed

Networking of differentially expressed genes in human cancer cells resistant to methotrexate

Elisabet Selga, Carlota Oleaga, Sara Ramírez, M Cristina de Almagro, Véronique Noé, Carlos J Ciudad Genome Medicine 2009, 1:83 (4 September 2009)

Dikkopf homolog-1, UDP-glucuronosyltransferase 1A and Eukaryotic translation elongation factor 1 alpha 1 play key roles in the development of resistance to methotrexate and offer novel therapeutic targets for chemosensitization to cancer therapy.

Methodology article   Open Access

caBIG™ VISDA: Modeling, visualization, and discovery for cluster analysis of genomic data

Yitan Zhu, Huai Li, David J Miller, Zuyi Wang, Jianhua Xuan, Robert Clarke, Eric P Hoffman, Yue Wang BMC Bioinformatics 2008, 9:383 (18 September 2008)

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Meta-analysis of nasopharyngeal carcinoma microarray data explores mechanism of EBV-regulated neoplastic transformation

Xia Chen, Shuang Liang, WenLing Zheng, ZhiJun Liao, Tao Shang, WenLi Ma BMC Genomics 2008, 9:322 (7 July 2008)

Research article   Open Access

Rank-based edge reconstruction for scale-free genetic regulatory networks

Guanrao Chen, Peter Larsen, Eyad Almasri, Yang Dai BMC Bioinformatics 2008, 9:75 (31 January 2008)